myRT

myRT report for GCA_003008335.1_ASM300833v1

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Seq: PVPN01000005.1 Escherichia coli strain B19783 NODE_106_length_2468_cov_182.21_ID_211, whole genome shotgun sequence (2468 bp)
Overview 1 RT 1: 3-2034 bp Neighborhood of RT #1 [3, 2279] PHA02517 RVT-GII GIIM Feature: gene Location: 3-164 bp Feature: domain Description: PHA02517 Location: 6-99 bp Feature: domain Description: PHA0251 7 Location: 6-99 bp Feature: gene Location: 756-2279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 029-1 761 bp Feature: domain Description: GIIM Note: maturase Location: 1836-2034 bp Feature: domain Description: GIIM Note: maturase Location: 1 836-2034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: PVPN01000085.1 Escherichia coli strain B19783 NODE_21_length_77298_cov_49.776_ID_41, whole genome shotgun sequence (77298 bp)
Overview 1 RT 1: 73275-76361 bp Neighborhood of RT #1 [73275, 76402] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 73275-73424 bp Feature: gene Location: 73725-74711 bp Feature: gene Location: 74713-75645 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74815-75409 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74815-75409 bp Feature: gene Location: 75671-75916 bp Feature: gene Location: 76100-76402 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76109-76361 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76109-76361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: PVPN01000098.1 Escherichia coli strain B19783 NODE_54_length_25075_cov_60.3626_ID_107, whole genome shotgun sequence (25075 bp)
Overview 1 RT 1: 1739-5875 bp Neighborhood of RT #1 [1739, 5875] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1739-1972 bp Feature: domain Description: DUF905 Location: 1769-1967 bp Feature: domain Description: DUF905 Location: 1769-1967 bp Feature: gene Location: 2040-2492 bp Feature: domain Description: PRK13732 Location: 2046-2490 bp Feature: domain Description: PRK13 73 2 Location: 2046-2490 bp Feature: gene Location: 2687-4588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2954-3785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2954-3 785 bp Feature: domain Description: Intron_maturas2 Location: 3899-4157 bp Feature: domain Description: Intron_maturas2 Location: 3 899-4157 bp Feature: domain Description: HNHc Note: nucleases Location: 4331-4493 bp Feature: domain Description: HNHc Note: nucleases Location: 43 3 1-4493 bp Feature: gene Location: 5330-5533 bp Feature: gene Location: 5585-5875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PVPN01000033.1 Escherichia coli strain B19783 NODE_71_length_11793_cov_35.313_ID_141, whole genome shotgun sequence (11793 bp)
Overview 1 RT 1: 804-7256 bp Neighborhood of RT #1 [804, 7256] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 804-1109 bp Feature: gene Location: 1992-4268 bp Feature: domain Description: AAA_15 Location: 2025-3033 bp Feature: domain Description: AAA_15 Location: 2025-3033 bp Feature: gene Location: 4383-5483 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4566-5094 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 566-5094 bp Feature: gene Location: 6139-7008 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 6661-6832 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 6661-6832 bp Feature: gene Location: 7005-7256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)