myRT

myRT report for GCA_003008345.1_ASM300834v1

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Seq: PVPW01000044.1 Escherichia coli strain B26737 NODE_18_length_85792_cov_57.9823_ID_35, whole genome shotgun sequence (85792 bp)
Overview 1 RT 1: 6332-12799 bp Neighborhood of RT #1 [6332, 12799] PinE RVT-GII Feature: gene Location: 6332-6550 bp Feature: domain Description: PinE Location: 6335-6542 bp Feature: domain Description: PinE Location: 6335-6542 bp Feature: gene Location: 6585-6956 bp Feature: gene Location: 6842-8329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7247-7937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7247-7937 bp Feature: gene Location: 8380-8613 bp Feature: gene Location: 8762-12799 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII

Seq: PVPW01000075.1 Escherichia coli strain B26737 NODE_20_length_77288_cov_71.4645_ID_39, whole genome shotgun sequence (77288 bp)
Overview 1 RT 1: 73266-76351 bp Neighborhood of RT #1 [73266, 76392] RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 73266-73415 bp Feature: gene Location: 73715-74701 bp Feature: gene Location: 74703-75635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74805-75399 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74805-75399 bp Feature: gene Location: 75661-75906 bp Feature: gene Location: 76090-76392 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76099-76351 bp Feature: domain Description: Arm-DNA-bind_3 Location: 76099-76351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: PVPW01000085.1 Escherichia coli strain B26737 NODE_48_length_19777_cov_71.8905_ID_95, whole genome shotgun sequence (19777 bp)
Overview 1 RT 1: 1027-4855 bp Neighborhood of RT #1 [1027, 4980] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 1027-1419 bp Feature: gene Location: 1448-1816 bp Feature: gene Location: 2390-4057 bp Feature: domain Description: RVT_N Location: 2438-2675 bp Feature: domain Description: RVT_N Location: 243 8-2675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2726-3368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2726-3 3 68 bp Feature: domain Description: GIIM Note: maturase Location: 3419-3653 bp Feature: domain Description: GIIM Note: maturase Location: 3 419-3 653 bp Feature: domain Description: HNHc Note: nucleases Location: 3863-4022 bp Feature: domain Description: HNHc Note: nucleases Location: 3 863 -4022 bp Feature: gene Location: 4312-4506 bp Feature: gene Location: 4558-4980 bp Feature: domain Description: DUF1380 Location: 4561-4855 bp Feature: domain Description: DUF13 80 Location: 4561-4855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: PVPW01000005.1 Escherichia coli strain B26737 NODE_88_length_2272_cov_324.833_ID_175, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PVPW01000050.1 Escherichia coli strain B26737 NODE_9_length_165343_cov_66.8203_ID_17, whole genome shotgun sequence (165343 bp)
Overview 1 RT 1: 148634-152916 bp Neighborhood of RT #1 [148634, 152924] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 148634-149539 bp Feature: gene Location: 149676-149867 bp Feature: gene Location: 150024-150563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150354-150432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 035 4-15 0432 bp Feature: gene Location: 150591-151112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150597-150879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 05 97-15 0879 bp Feature: domain Description: GIIM Note: maturase Location: 150927-151107 bp Feature: domain Description: GIIM Note: maturase Location: 15 0927-15 1107 bp Feature: gene Location: 151434-151622 bp Feature: gene Location: 151662-152924 bp Feature: domain Description: YesM Location: 152175-152916 bp Feature: domain Description: YesM Location: 15 2175 -15 2916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)