myRT

myRT report for GCA_003008855.1_ASM300885v1

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Seq: PGIZ01000114.1 Escherichia coli strain 11f7 NODE_114_length_2915_cov_63.5864, whole genome shotgun sequence (2915 bp)
Overview 1 RT 1: 1-2912 bp Neighborhood of RT #1 [1, 2912] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-192 bp Feature: gene Location: 274-2175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541-1372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 -1 372 bp Feature: domain Description: Intron_maturas2 Location: 1486-1744 bp Feature: domain Description: Intron_maturas2 Location: 1 486-1 744 bp Feature: domain Description: HNHc Note: nucleases Location: 1918-2080 bp Feature: domain Description: HNHc Note: nucleases Location: 1 91 8-2080 bp Feature: gene Location: 2748-2912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PGIZ01000143.1 Escherichia coli strain 11f7 NODE_143_length_2075_cov_286.73, whole genome shotgun sequence (2075 bp)
Overview 1 RT 1: 2-1891 bp Neighborhood of RT #1 [2, 2073] RVT-GII GIIM Feature: gene Location: 2-319 bp Feature: gene Location: 613-2073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886-1618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886-1618 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1891 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGIZ01000032.1 Escherichia coli strain 11f7 NODE_32_length_35115_cov_52.2515, whole genome shotgun sequence (35115 bp)
Overview 1 RT 1: 24315-28058 bp Neighborhood of RT #1 [24315, 28069] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 24315-24797 bp Feature: domain Description: SmpB Location: 24345-24792 bp Feature: domain Description: SmpB Location: 243 45-24792 bp Feature: gene Location: 24931-25098 bp Feature: gene Location: 25483-26256 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 25618-26071 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 25618-26071 bp Feature: gene Location: 26660-26878 bp Feature: domain Description: PRK09678 Location: 26663-26861 bp Feature: domain Description: PRK09678 Location: 26663 -26861 bp Feature: gene Location: 26969-28069 bp Feature: domain Description: D Location: 26975-28058 bp Feature: domain Description: D Location: 26975-28058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: PGIZ01000044.1 Escherichia coli strain 11f7 NODE_44_length_20226_cov_50.0571, whole genome shotgun sequence (20226 bp)
Overview 1 RT 1: 13847-17829 bp Neighborhood of RT #1 [13847, 17855] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 13847-14878 bp Feature: domain Description: Asparaginase_2 Location: 13937-14870 bp Feature: domain Description: Asparaginase_2 Location: 13937-14 870 bp Feature: gene Location: 15205-15354 bp Feature: gene Location: 15402-15848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15708-15810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15708-15810 bp Feature: gene Location: 16070-16441 bp Feature: gene Location: 16494-17855 bp Feature: domain Description: DcuC Location: 16497-17829 bp Feature: domain Description: DcuC Location: 164 97-17829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)