myRT

myRT report for GCA_003008915.1_ASM300891v1

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Seq: PGJD01000013.1 Escherichia coli strain sc11-25 NODE_13_length_160939_cov_97.3063, whole genome shotgun sequence (160939 bp)
Overview 1 RT 1: 71243-74003 bp Neighborhood of RT #1 [71243, 74008] RVT-UG17 SLATT_5 PRK10597 Feature: gene Location: 71243-71380 bp Feature: gene Location: 71396-71530 bp Feature: gene Location: 71638-73008 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 71866-72472 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 71 866-72472 bp Feature: gene Location: 72986-73537 bp Feature: domain Description: SLATT_5 Location: 72992-73508 bp Feature: domain Description: SLATT_5 Location: 72992-73508 bp Feature: gene Location: 73760-74008 bp Feature: domain Description: PRK10597 Location: 73763-74003 bp Feature: domain Description: PRK1 0597 Location: 73763-74003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: PGJD01000033.1 Escherichia coli strain sc11-25 NODE_33_length_28027_cov_90.5018, whole genome shotgun sequence (28027 bp)
Overview 1 RT 1: 24384-27796 bp Neighborhood of RT #1 [24384, 27804] InsE PHA02517 RVT-GII GIIM Tra5 Feature: gene Location: 24384-24683 bp Feature: domain Description: InsE Location: 24414-24678 bp Feature: domain Description: InsE Location: 2 4414-2 4678 bp Feature: gene Location: 24680-25147 bp Feature: domain Description: PHA02517 Location: 24746-25085 bp Feature: domain Description: PHA02 517 Location: 2 4746-2 5085 bp Feature: gene Location: 25739-26980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26012-26744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6012 -2 6744 bp Feature: domain Description: GIIM Note: maturase Location: 26819-26975 bp Feature: domain Description: GIIM Note: maturase Location: 2 6819-2 6975 bp Feature: gene Location: 27032-27262 bp Feature: gene Location: 27373-27804 bp Feature: domain Description: Tra5 Location: 27379-27796 bp Feature: domain Description: Tra5 Location: 2 7379-2 7796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)

Seq: PGJD01000054.1 Escherichia coli strain sc11-25 NODE_54_length_10492_cov_60.005, whole genome shotgun sequence (10492 bp)
Overview 1 RT 1: 4829-10490 bp Neighborhood of RT #1 [4829, 10489] RVT-GII GIIM RAYT PRK11447 Feature: gene Location: 4829-4966 bp Feature: gene Location: 5056-5325 bp Feature: gene Location: 5350-6696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5638-6256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563 8-6256 bp Feature: domain Description: GIIM Note: maturase Location: 6304-6535 bp Feature: domain Description: GIIM Note: maturase Location: 63 04-653 5 bp Feature: gene Location: 6850-7389 bp Feature: domain Description: RAYT Location: 6928-7291 bp Feature: domain Description: RAYT Location: 6928-7291 bp Feature: gene Location: 7736-10489 bp Feature: domain Description: PRK11447 Location: 7739-10490 bp Feature: domain Description: PRK11447 Location: 773 9-10490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RAYT (COG1943), PRK11447 (cellulose synthase subunit BcsC; Provisional)