myRT

myRT report for GCA_003008945.1_ASM300894v1

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Seq: PGJF01000014.1 Escherichia coli strain HDC9 NODE_14_length_131630_cov_119.538, whole genome shotgun sequence (131630 bp)
Overview 1 RT 1: 43382-53677 bp Neighborhood of RT #1 [43382, 53694] Resolvase RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 43382-44047 bp Feature: domain Description: Resolvase Location: 43403-43820 bp Feature: domain Description: Resolvase Location: 43403-43820 bp Feature: gene Location: 44096-44278 bp Feature: gene Location: 44315-46021 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44465-45062 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44465-45062 bp Feature: gene Location: 46158-46655 bp Feature: gene Location: 46895-47356 bp Feature: domain Description: HTH_XRE Location: 46925-47093 bp Feature: domain Description: HTH_XRE Location: 46925-47093 bp Feature: gene Location: 47387-48568 bp Feature: domain Description: DUF4062 Location: 47402-47729 bp Feature: domain Description: DUF4062 Location: 47402-47729 bp Feature: gene Location: 49277-50461 bp Feature: domain Description: PRK09692 Location: 49283-50438 bp Feature: domain Description: PRK09692 Location: 49283-50438 bp Feature: gene Location: 50454-52082 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50862-51291 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50862-51 291 bp Feature: gene Location: 52079-52819 bp Feature: gene Location: 53122-53694 bp Feature: domain Description: Psu Location: 53140-53677 bp Feature: domain Description: Psu Location: 531 40-53677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: PGJF01000023.1 Escherichia coli strain HDC9 NODE_23_length_68522_cov_125.136, whole genome shotgun sequence (68522 bp)
Overview 1 RT 1: 158-4087 bp Neighborhood of RT #1 [158, 4087] PHA02517 RVT-GII GIIM Feature: gene Location: 158-781 bp Feature: gene Location: 960-1400 bp Feature: domain Description: PHA02517 Location: 963-1365 bp Feature: domain Description: PHA02 517 Location: 963-1365 bp Feature: gene Location: 1529-3052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1802-2534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1802 -2 534 bp Feature: domain Description: GIIM Note: maturase Location: 2609-2807 bp Feature: domain Description: GIIM Note: maturase Location: 2 609-2 807 bp Feature: gene Location: 3346-3717 bp Feature: gene Location: 3788-4087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)