myRT

myRT report for GCA_003009065.1_ASM300906v1

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Seq: PGJK01000018.1 Escherichia coli strain c83612 NODE_18_length_85781_cov_119.087, whole genome shotgun sequence (85781 bp)
Overview 1 RT 1: 131-4162 bp Neighborhood of RT #1 [131, 4179] PRK09692 RVT-UG7 Psu Feature: gene Location: 131-946 bp Feature: domain Description: PRK09692 Location: 143-923 bp Feature: domain Description: PRK09692 Location: 1 43-923 bp Feature: gene Location: 939-2567 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1347-1776 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 347-1 776 bp Feature: gene Location: 2564-3304 bp Feature: gene Location: 3607-4179 bp Feature: domain Description: Psu Location: 3625-4162 bp Feature: domain Description: Psu Location: 3625-41 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: PGJK01000020.1 Escherichia coli strain c83612 NODE_20_length_82144_cov_115.835, whole genome shotgun sequence (82144 bp)
Overview 1 RT 1: 64303-69148 bp Neighborhood of RT #1 [64303, 69148] DUF3987 Inovirus_Gp2 RVT-GII Feature: gene Location: 64303-65736 bp Feature: domain Description: DUF3987 Location: 64396-65473 bp Feature: domain Description: DUF3987 Location: 64396-65473 bp Feature: gene Location: 66594-67157 bp Feature: domain Description: Inovirus_Gp2 Location: 66651-67092 bp Feature: domain Description: Inovirus_Gp2 Location: 66651-67092 bp Feature: gene Location: 67483-68646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67597-68284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67597-682 84 bp Feature: gene Location: 68633-68941 bp Feature: gene Location: 68975-69148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3987 (pfam13148), Inovirus_Gp2 (pfam11726), RVT-GII

Seq: PGJK01000041.1 Escherichia coli strain c83612 NODE_41_length_23971_cov_117.583, whole genome shotgun sequence (23971 bp)
Overview 1 RT 1: 11694-17386 bp Neighborhood of RT #1 [11694, 17844] InsE PHA02517 RVT-GII GIIM PHA02517 HsdM Feature: gene Location: 11694-12020 bp Feature: domain Description: InsE Location: 11697-12018 bp Feature: domain Description: InsE Location: 11697-12018 bp Feature: gene Location: 12020-12499 bp Feature: domain Description: PHA02517 Location: 12080-12434 bp Feature: domain Description: PHA02517 Location: 12080-1243 4 bp Feature: gene Location: 13268-14614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13364-14096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 64-14096 bp Feature: domain Description: GIIM Note: maturase Location: 14171-14369 bp Feature: domain Description: GIIM Note: maturase Location: 14171-143 69 bp Feature: gene Location: 14779-15162 bp Feature: domain Description: PHA02517 Location: 14782-15157 bp Feature: domain Description: PHA02517 Location: 14782-15157 bp Feature: gene Location: 15385-17844 bp Feature: domain Description: HsdM Location: 15442-17386 bp Feature: domain Description: HsdM Location: 15442-173 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HsdM (COG0286)