myRT

myRT report for GCA_003009095.1_ASM300909v1

Download annotations/find similar RTs

Seq: PGJM01000030.1 Escherichia coli strain GZC09-15 NODE_30_length_34708_cov_130.305, whole genome shotgun sequence (34708 bp)
Overview 1 RT 1: 24314-28057 bp Neighborhood of RT #1 [24314, 28068] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 24314-24796 bp Feature: domain Description: SmpB Location: 24344-24791 bp Feature: domain Description: SmpB Location: 24344-24791 bp Feature: gene Location: 24930-25097 bp Feature: gene Location: 25482-26255 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 25617-26070 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2561 7-26070 bp Feature: gene Location: 26659-26877 bp Feature: domain Description: PRK09678 Location: 26662-26860 bp Feature: domain Description: PRK09678 Location: 26662-26860 bp Feature: gene Location: 26968-28068 bp Feature: domain Description: D Location: 26974-28057 bp Feature: domain Description: D Location: 26974-28057 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: PGJM01000038.1 Escherichia coli strain GZC09-15 NODE_38_length_17294_cov_115.585, whole genome shotgun sequence (17294 bp)
Overview 1 RT 1: 10915-14897 bp Neighborhood of RT #1 [10915, 14923] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 10915-11946 bp Feature: domain Description: Asparaginase_2 Location: 11005-11938 bp Feature: domain Description: Asparaginase_2 Location: 11005-11938 bp Feature: gene Location: 12273-12422 bp Feature: gene Location: 12470-12916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12776-12878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 776-12 878 bp Feature: gene Location: 13138-13509 bp Feature: gene Location: 13562-14923 bp Feature: domain Description: DcuC Location: 13565-14897 bp Feature: domain Description: DcuC Location: 13565-14897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)