myRT

myRT report for GCA_003009115.1_ASM300911v1

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Seq: PTJL01000006.1 Escherichia coli strain EXF1-6 2013 NODE_6_length_197881_cov_130.615, whole genome shotgun sequence (197881 bp)
Overview 1 RT 1: 135368-141399 bp 2 RT 2: 166675-171258 bp Neighborhood of RT #1 [135368, 141399] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Neighborhood of RT #2 [166675, 171521] RVT-GII Inovirus_Gp2 DUF3987 Feature: gene Location: 135368-136288 bp Feature: domain Description: AbiEii Location: 135410-136151 bp Feature: domain Description: AbiEii Location: 1 3541 0-1 361 51 bp Feature: gene Location: 136275-137078 bp Feature: domain Description: AbiEi_3_N Location: 136308-136569 bp Feature: domain Description: AbiEi_3_N Location: 1 36308-1 36569 bp Feature: domain Description: AbiEi_3 Location: 136581-137037 bp Feature: domain Description: AbiEi_3 Location: 1 36581 -1 37037 bp Feature: gene Location: 137373-140582 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 137901-138390 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 37901 -1 38390 bp Feature: domain Description: nitrilase Location: 139896-140493 bp Feature: domain Description: nitrilase Location: 1 39896-1 40493 bp Feature: gene Location: 140743-140883 bp Feature: domain Description: Phage_ASH Location: 140770-140863 bp Feature: domain Description: Phage_ASH Location: 1 40770-1 40863 bp Feature: gene Location: 140929-141399 bp Feature: gene Location: 166675-166848 bp Feature: gene Location: 166882-167190 bp Feature: gene Location: 167177-168340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167291-167978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67291 -1 67978 bp Feature: gene Location: 168666-169229 bp Feature: domain Description: Inovirus_Gp2 Location: 168723-169164 bp Feature: domain Description: Inovirus_Gp2 Location: 1 68723-1 691 64 bp Feature: gene Location: 170088-171521 bp Feature: domain Description: DUF3987 Location: 170181-171258 bp Feature: domain Description: DUF3987 Location: 1 701 81 -1 71 258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554), RVT-GII, Inovirus_Gp2 (pfam11726), DUF3987 (pfam13148)

Seq: PTJL01000092.1 Escherichia coli strain EXF1-6 2013 NODE_92_length_7949_cov_97.0157, whole genome shotgun sequence (7949 bp)
Overview 1 RT 1: 224-3639 bp Neighborhood of RT #1 [224, 3644] Tra5 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 224-655 bp Feature: domain Description: Tra5 Location: 230-647 bp Feature: domain Description: Tra5 Location: 2 30-647 bp Feature: gene Location: 766-996 bp Feature: gene Location: 1048-2289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1321-2053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 1-2 053 bp Feature: domain Description: GIIM Note: maturase Location: 2128-2284 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 8-2 2 84 bp Feature: gene Location: 2881-3348 bp Feature: domain Description: PHA02517 Location: 2947-3286 bp Feature: domain Description: PHA02 517 Location: 2 947-32 86 bp Feature: gene Location: 3345-3644 bp Feature: domain Description: InsE Location: 3375-3639 bp Feature: domain Description: InsE Location: 3375-3639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)