myRT

myRT report for GCA_003009145.1_ASM300914v1

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Seq: PGJO01000032.1 Escherichia coli strain sc12-100 NODE_32_length_46133_cov_93.8205, whole genome shotgun sequence (46133 bp)
Overview 1 RT 1: 39564-44843 bp Neighborhood of RT #1 [39564, 44959] RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 39564-39704 bp Feature: gene Location: 39814-40554 bp Feature: gene Location: 40551-42179 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 40959-41388 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 40959-41 388 bp Feature: gene Location: 42172-43356 bp Feature: domain Description: PRK09692 Location: 42178-43333 bp Feature: domain Description: PRK09692 Location: 421 78-43333 bp Feature: gene Location: 43625-44959 bp Feature: domain Description: Phage_int_SAM_5 Location: 43994-44231 bp Feature: domain Description: Phage_int_SAM_5 Location: 43994-44231 bp Feature: domain Description: INT_C_like_1 Location: 44327-44843 bp Feature: domain Description: INT_C_like_1 Location: 44327-44843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)

Seq: PGJO01000089.1 Escherichia coli strain sc12-100 NODE_89_length_2528_cov_129.756, whole genome shotgun sequence (2528 bp)
Overview 1 RT 1: 1-2062 bp Neighborhood of RT #1 [1, 2307] PHA02517 RVT-GII GIIM Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02 517 Location: 4-12 7 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2 062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)