myRT

myRT report for GCA_003009195.1_ASM300919v1

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Seq: PGJQ01000143.1 Escherichia coli strain ECRLC09 NODE_143_length_4511_cov_18.3973, whole genome shotgun sequence (4511 bp)
Overview 1 RT 1: 1575-4510 bp Neighborhood of RT #1 [1575, 4509] Antirestrict RVT-GII GIIM HNHc TraX_Ftype PRK13754 Feature: gene Location: 1575-2000 bp Feature: domain Description: Antirestrict Location: 1710-1998 bp Feature: domain Description: Antirestrict Location: 1 71 0-1 998 bp Feature: gene Location: 2175-2453 bp Feature: gene Location: 2954-3820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2957-3131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2957-31 31 bp Feature: domain Description: GIIM Note: maturase Location: 3182-3413 bp Feature: domain Description: GIIM Note: maturase Location: 31 82-341 3 bp Feature: domain Description: HNHc Note: nucleases Location: 3626-3785 bp Feature: domain Description: HNHc Note: nucleases Location: 3626-3785 bp Feature: gene Location: 3851-4180 bp Feature: domain Description: TraX_Ftype Location: 3854-4163 bp Feature: domain Description: TraX_Ftype Location: 3854-41 63 bp Feature: gene Location: 4195-4509 bp Feature: domain Description: PRK13754 Location: 4258-4510 bp Feature: domain Description: PRK1 3754 Location: 4258-451 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TraX_Ftype (TIGR02755), PRK13754 (fertility inhibition protein FinO)

Seq: PGJQ01000061.1 Escherichia coli strain ECRLC09 NODE_61_length_16105_cov_15.3483, whole genome shotgun sequence (16105 bp)
Overview 1 RT 1: 132-3409 bp 2 RT 2: 11389-15909 bp Neighborhood of RT #1 [132, 3409] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [11389, 15974] DUF262 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 132-557 bp Feature: domain Description: PHA02517 Location: 156-492 bp Feature: domain Description: PHA02 517 Location: 156-492 bp Feature: gene Location: 1149-2672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1422-2154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 2 -2 154 bp Feature: domain Description: GIIM Note: maturase Location: 2229-2427 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 2 9-2 42 7 bp Feature: gene Location: 2795-3205 bp Feature: domain Description: PHA02517 Location: 2798-3200 bp Feature: domain Description: PHA02 517 Location: 2 798-32 00 bp Feature: gene Location: 3239-3409 bp Feature: gene Location: 11389-12843 bp Feature: domain Description: DUF262 Location: 11452-12013 bp Feature: domain Description: DUF2 62 Location: 11452 -12 013 bp Feature: gene Location: 12865-13239 bp Feature: domain Description: PHA02517 Location: 12868-13228 bp Feature: domain Description: PHA02 517 Location: 12 868-132 2 8 bp Feature: gene Location: 13434-14957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13707-14439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13707-14439 bp Feature: domain Description: GIIM Note: maturase Location: 14514-14712 bp Feature: domain Description: GIIM Note: maturase Location: 14514-14712 bp Feature: gene Location: 14911-15336 bp Feature: gene Location: 15549-15974 bp Feature: domain Description: PHA02517 Location: 15573-15909 bp Feature: domain Description: PHA02 517 Location: 15573-15909 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF262 (pfam03235)