myRT

myRT report for GCA_003009405.1_ASM300940v1

Download annotations/find similar RTs

Seq: PGKB01000160.1 Escherichia coli strain 11a6 NODE_160_length_1973_cov_461.198, whole genome shotgun sequence (1973 bp)
Overview 1 RT 1: 2-1891 bp Neighborhood of RT #1 [2, 1971] RVT-GII GIIM Feature: gene Location: 2-319 bp Feature: gene Location: 790-1971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886-1618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886-1 61 8 bp Feature: domain Description: GIIM Note: maturase Location: 1693-1891 bp Feature: domain Description: GIIM Note: maturase Location: 1 693-1 891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGKB01000033.1 Escherichia coli strain 11a6 NODE_33_length_34709_cov_115.635, whole genome shotgun sequence (34709 bp)
Overview 1 RT 1: 24315-28058 bp Neighborhood of RT #1 [24315, 28069] SmpB RVT-UG11 PRK09678 D Feature: gene Location: 24315-24797 bp Feature: domain Description: SmpB Location: 24345-24792 bp Feature: domain Description: SmpB Location: 2 4345-2 4792 bp Feature: gene Location: 24931-25098 bp Feature: gene Location: 25483-26256 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 25618-26071 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 5618-2 6071 bp Feature: gene Location: 26660-26878 bp Feature: domain Description: PRK09678 Location: 26663-26861 bp Feature: domain Description: PRK09678 Location: 2 6663-2 6861 bp Feature: gene Location: 26969-28069 bp Feature: domain Description: D Location: 26975-28058 bp Feature: domain Description: D Location: 2 6975-2 8058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561)

Seq: PGKB01000047.1 Escherichia coli strain 11a6 NODE_47_length_19524_cov_106.618, whole genome shotgun sequence (19524 bp)
Overview 1 RT 1: 13145-17127 bp Neighborhood of RT #1 [13145, 17153] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 13145-14176 bp Feature: domain Description: Asparaginase_2 Location: 13235-14168 bp Feature: domain Description: Asparaginase_2 Location: 13 23 5-14168 bp Feature: gene Location: 14503-14652 bp Feature: gene Location: 14700-15146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15006-15108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15006-15108 bp Feature: gene Location: 15368-15739 bp Feature: gene Location: 15792-17153 bp Feature: domain Description: DcuC Location: 15795-17127 bp Feature: domain Description: DcuC Location: 15795-17127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: PGKB01000055.1 Escherichia coli strain 11a6 NODE_55_length_13079_cov_66.347, whole genome shotgun sequence (13079 bp)
Overview 1 RT 1: 10274-12955 bp Neighborhood of RT #1 [10274, 13077] RVT-GII RVT-GII GIIM PRK09707 Feature: gene Location: 10274-10411 bp Feature: gene Location: 10501-10770 bp Feature: gene Location: 10795-11439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11083-11434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11083-114 34 bp Feature: gene Location: 11446-12141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11449-11701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 4 9-11701 bp Feature: domain Description: GIIM Note: maturase Location: 11749-11980 bp Feature: domain Description: GIIM Note: maturase Location: 1174 9-11980 bp Feature: gene Location: 12531-12713 bp Feature: gene Location: 12766-13077 bp Feature: domain Description: PRK09707 Location: 12769-12955 bp Feature: domain Description: PRK09707 Location: 12769-12955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09707 (putative lipoprotein; Provisional)