myRT

myRT report for GCA_003009995.1_ASM300999v1

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Seq: PGKW01000052.1 Escherichia coli strain Eqsg1-6 NODE_52_length_16038_cov_105.174, whole genome shotgun sequence (16038 bp)
Overview 1 RT 1: 9659-13641 bp Neighborhood of RT #1 [9659, 13667] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 9659-10690 bp Feature: domain Description: Asparaginase_2 Location: 9749-10682 bp Feature: domain Description: Asparaginase_2 Location: 9749-1 0682 bp Feature: gene Location: 11017-11166 bp Feature: gene Location: 11214-11660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11520-11622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 520-1 1 622 bp Feature: gene Location: 11882-12253 bp Feature: gene Location: 12306-13667 bp Feature: domain Description: DcuC Location: 12309-13641 bp Feature: domain Description: DcuC Location: 1 2309-1 3641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DcuC (TIGR00771), Asparaginase_2 (pfam01112)

Seq: PGKW01000074.1 Escherichia coli strain Eqsg1-6 NODE_74_length_5855_cov_95.4204, whole genome shotgun sequence (5855 bp)
Overview 1 RT 1: 2212-5624 bp Neighborhood of RT #1 [2212, 5632] InsE PHA02517 RVT-GII GIIM Tra5 Feature: gene Location: 2212-2511 bp Feature: domain Description: InsE Location: 2242-2506 bp Feature: domain Description: InsE Location: 2 2 42 -2 506 bp Feature: gene Location: 2508-2975 bp Feature: domain Description: PHA02517 Location: 2574-2913 bp Feature: domain Description: PHA02 517 Location: 2 574-2 913 bp Feature: gene Location: 3567-4808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3840-4572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3840-4572 bp Feature: domain Description: GIIM Note: maturase Location: 4647-4803 bp Feature: domain Description: GIIM Note: maturase Location: 4647-4803 bp Feature: gene Location: 4860-5090 bp Feature: gene Location: 5201-5632 bp Feature: domain Description: Tra5 Location: 5207-5624 bp Feature: domain Description: Tra5 Location: 52 07-562 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)