myRT

myRT report for GCA_003013595.1_ASM301359v1

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Seq: PXZE01000106.1 Nocardia seriolae strain HSY-NS01 Scaffold106, whole genome shotgun sequence (25673 bp)
Overview 1 RT 1: 22298-25559 bp Neighborhood of RT #1 [22298, 25559] DUF4096 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 22298-22660 bp Feature: domain Description: DUF4096 Location: 22331-22559 bp Feature: domain Description: DUF4096 Location: 22331 -22559 bp Feature: gene Location: 22735-23070 bp Feature: domain Description: DDE_Tnp_1 Location: 22741-22990 bp Feature: domain Description: DDE_Tnp_1 Location: 22741 -22990 bp Feature: gene Location: 23528-25312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23789-24587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23789-24587 bp Feature: domain Description: Intron_maturas2 Location: 24704-24917 bp Feature: domain Description: Intron_maturas2 Location: 24704-2491 7 bp Feature: domain Description: HNHc Note: nucleases Location: 25112-25268 bp Feature: domain Description: HNHc Note: nucleases Location: 251 1 2-25268 bp Feature: gene Location: 25329-25559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PXZE01000162.1 Nocardia seriolae strain HSY-NS01 Scaffold162, whole genome shotgun sequence (13539 bp)
Overview 1 RT 1: 3693-6844 bp Neighborhood of RT #1 [3693, 6879] YkfC RVT-GII PHA02517 Tra8 Tra8 Tra8 Feature: gene Location: 3693-3932 bp Feature: gene Location: 4209-4577 bp Feature: domain Description: YkfC Location: 4356-4515 bp Feature: domain Description: YkfC Location: 4356-4515 bp Feature: gene Location: 4574-5134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4622-5072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462 2 -5072 bp Feature: gene Location: 5144-5389 bp Feature: domain Description: PHA02517 Location: 5153-5357 bp Feature: domain Description: PHA02 517 Location: 5153-5357 bp Feature: gene Location: 5566-6879 bp Feature: domain Description: Tra8 Location: 5719-5980 bp Feature: domain Description: Tra8 Location: 5719-5980 bp Feature: domain Description: Tra8 Location: 6079-6445 bp Feature: domain Description: Tra8 Location: 6079-6445 bp Feature: domain Description: Tra8 Location: 6511-6844 bp Feature: domain Description: Tra8 Location: 6511-6844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Tra8 (COG2826)

Seq: PXZE01000275.1 Nocardia seriolae strain HSY-NS01 Scaffold275, whole genome shotgun sequence (2363 bp)
Overview 1 RT 1: 2-2179 bp Neighborhood of RT #1 [2, 2179] RVT-GII GIIM Feature: gene Location: 2-1147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-683 bp Feature: domain Description: GIIM Note: maturase Location: 758-989 bp Feature: domain Description: GIIM Note: maturase Location: 758-989 bp Feature: gene Location: 1277-2179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PXZE01000276.1 Nocardia seriolae strain HSY-NS01 Scaffold276, whole genome shotgun sequence (2233 bp)
Overview 1 RT 1: 204-1495 bp Neighborhood of RT #1 [204, 2232] RVT-GII DDE_5 Feature: gene Location: 204-788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462-759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 62-759 bp Feature: gene Location: 808-2232 bp Feature: domain Description: DDE_5 Location: 874-1495 bp Feature: domain Description: DDE_5 Location: 874 -14 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_5 (pfam13546)