myRT

myRT report for GCA_003013815.1_ASM301381v1

Download annotations/find similar RTs

Seq: PRLH01000137.1 Cyanothece sp. BG0011 unitig_0, whole genome shotgun sequence (133554 bp)
Overview 1 RT 1: 44947-50198 bp Neighborhood of RT #1 [44947, 50198] cyclophilin_TLP40_like PRK02542 RVT_N RVT-GII GIIM HNH Feature: gene Location: 44947-45675 bp Feature: domain Description: cyclophilin_TLP40_like Location: 45142-45655 bp Feature: domain Description: cyclophilin_TLP40_like Location: 451 42-45655 bp Feature: gene Location: 46008-46559 bp Feature: domain Description: PRK02542 Location: 46017-46557 bp Feature: domain Description: PRK02542 Location: 4601 7-46557 bp Feature: gene Location: 46712-48607 bp Feature: domain Description: RVT_N Location: 46751-46997 bp Feature: domain Description: RVT_N Location: 46751 -46997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47039-47744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47039-47744 bp Feature: domain Description: GIIM Note: maturase Location: 47852-48083 bp Feature: domain Description: GIIM Note: maturase Location: 47852-48083 bp Feature: domain Description: HNH Note: nucleases Location: 48314-48449 bp Feature: domain Description: HNH Note: nucleases Location: 4831 4-48449 bp Feature: gene Location: 49531-49788 bp Feature: gene Location: 49929-50198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cyclophilin_TLP40_like (cd01924), PRK02542 (photosystem I assembly protein Ycf4; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: PRLH01000048.1 Cyanothece sp. BG0011 unitig_13, whole genome shotgun sequence (73832 bp)
Overview 1 RT 1: 68548-73822 bp Neighborhood of RT #1 [68548, 73830] PRK02534 Ank_2 Ank Ank_2 Ank_2 Ank Ank_2 RVT_N RVT-GII GIIM McrA McrA group_II_RT_mat Feature: gene Location: 68548-69498 bp Feature: domain Description: PRK02534 Location: 68551-69487 bp Feature: domain Description: PRK02 534 Location: 68551-69487 bp Feature: gene Location: 69596-70864 bp Feature: domain Description: Ank_2 Location: 69623-69902 bp Feature: domain Description: Ank_2 Location: 6962 3-69902 bp Feature: domain Description: Ank Location: 69908-70001 bp Feature: domain Description: Ank Location: 69908-70001 bp Feature: domain Description: Ank_2 Location: 70004-70184 bp Feature: domain Description: Ank_2 Location: 70004-70184 bp Feature: domain Description: Ank_2 Location: 70205-70481 bp Feature: domain Description: Ank_2 Location: 702 05-70481 bp Feature: domain Description: Ank Location: 70484-70571 bp Feature: domain Description: Ank Location: 70484-70571 bp Feature: domain Description: Ank_2 Location: 70598-70859 bp Feature: domain Description: Ank_2 Location: 70598-70859 bp Feature: gene Location: 70957-72567 bp Feature: domain Description: RVT_N Location: 70990-71236 bp Feature: domain Description: RVT_N Location: 70990-712 36 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71287-71911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 712 87-71911 bp Feature: domain Description: GIIM Note: maturase Location: 71971-72136 bp Feature: domain Description: GIIM Note: maturase Location: 71971-72 136 bp Feature: domain Description: McrA Location: 72157-72496 bp Feature: domain Description: McrA Location: 72 157-72 496 bp Feature: gene Location: 73155-73634 bp Feature: domain Description: McrA Location: 73221-73566 bp Feature: domain Description: McrA Location: 732 2 1-73566 bp Feature: gene Location: 73645-73830 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 73648-73822 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 73648-7382 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02534 (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional), Ank_2 (pfam12796), Ank (pfam00023), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), group_II_RT_mat (TIGR04416)

Seq: PRLH01000177.1 Cyanothece sp. BG0011 unitig_15, whole genome shotgun sequence (4715 bp)
Overview 1 RT 1: 3-4715 bp Neighborhood of RT #1 [3, 4714] RVT_N RVT-GII RVT_N RVT-GII GIIM HNH FtsZ Feature: gene Location: 3-599 bp Feature: domain Description: RVT_N Location: 36-282 bp Feature: domain Description: RVT_N Location: 3 6-282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 3 -480 bp Feature: gene Location: 1197-2987 bp Feature: domain Description: RVT_N Location: 1236-1482 bp Feature: domain Description: RVT_N Location: 123 6-1482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1527-2217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1527-2217 bp Feature: domain Description: GIIM Note: maturase Location: 2328-2562 bp Feature: domain Description: GIIM Note: maturase Location: 23 28-2562 bp Feature: domain Description: HNH Note: nucleases Location: 2772-2904 bp Feature: domain Description: HNH Note: nucleases Location: 2772-2904 bp Feature: gene Location: 3827-4054 bp Feature: gene Location: 4373-4714 bp Feature: domain Description: FtsZ Location: 4550-4715 bp Feature: domain Description: FtsZ Location: 4550-4715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), FtsZ (COG0206)

Seq: PRLH01000222.1 Cyanothece sp. BG0011 unitig_208, whole genome shotgun sequence (3185 bp)
Overview 1 RT 1: 69-3184 bp Neighborhood of RT #1 [69, 3184] UvrD-helicase RVT-UG25 Feature: gene Location: 69-299 bp Feature: domain Description: UvrD-helicase Location: 90-282 bp Feature: domain Description: UvrD-helicase Location: 90-282 bp Feature: gene Location: 315-1862 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 321-645 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 321-64 5 bp Feature: gene Location: 1958-3184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD-helicase (pfam00580), RVT-UG25

Seq: PRLH01000183.1 Cyanothece sp. BG0011 unitig_229, whole genome shotgun sequence (90891 bp)
Overview 1 RT 1: 33337-39336 bp Neighborhood of RT #1 [33337, 39336] MPP_GpdQ InsQ RVT_N RVT-GII McrA Feature: gene Location: 33337-34431 bp Feature: domain Description: MPP_GpdQ Location: 33355-34003 bp Feature: domain Description: MPP_GpdQ Location: 3335 5 -34003 bp Feature: gene Location: 34882-36081 bp Feature: domain Description: InsQ Location: 35113-36025 bp Feature: domain Description: InsQ Location: 35 113-36025 bp Feature: gene Location: 36242-36934 bp Feature: domain Description: RVT_N Location: 36281-36527 bp Feature: domain Description: RVT_N Location: 36281-365 27 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36572-36926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365 72-36926 bp Feature: gene Location: 36934-37284 bp Feature: domain Description: McrA Location: 36967-37252 bp Feature: domain Description: McrA Location: 36967-3725 2 bp Feature: gene Location: 37345-39336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPP_GpdQ (cd07402), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: PRLH01000143.1 Cyanothece sp. BG0011 unitig_234, whole genome shotgun sequence (62350 bp)
Overview 1 RT 1: 37283-43145 bp Neighborhood of RT #1 [37283, 43186] HU RVT_N RVT-GII GIIM COG3367 FhlA BaeS PRK11360 Feature: gene Location: 37283-37447 bp Feature: domain Description: HU Location: 37289-37436 bp Feature: domain Description: HU Location: 37289-37436 bp Feature: gene Location: 37690-37824 bp Feature: gene Location: 38178-39698 bp Feature: domain Description: RVT_N Location: 38250-38481 bp Feature: domain Description: RVT_N Location: 38250-38481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38541-39213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38541-39213 bp Feature: domain Description: GIIM Note: maturase Location: 39312-39522 bp Feature: domain Description: GIIM Note: maturase Location: 39312-39522 bp Feature: gene Location: 40137-41168 bp Feature: domain Description: COG3367 Location: 40164-41157 bp Feature: domain Description: COG336 7 Location: 4016 4-41157 bp Feature: gene Location: 41642-43186 bp Feature: domain Description: FhlA Location: 41750-42242 bp Feature: domain Description: FhlA Location: 41750-42242 bp Feature: domain Description: BaeS Location: 42281-42815 bp Feature: domain Description: BaeS Location: 42281-42815 bp Feature: domain Description: PRK11360 Location: 43043-43145 bp Feature: domain Description: PRK1136 0 Location: 43043-43145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU (cd13831), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3367 (Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family ), FhlA (COG3604), BaeS (COG0642), PRK11360 (two-component system sensor histidine kinase AtoS)

Seq: PRLH01000031.1 Cyanothece sp. BG0011 unitig_242, whole genome shotgun sequence (9994 bp)
Overview 1 RT 1: 4077-9452 bp Neighborhood of RT #1 [4077, 9463] GIIM McrA RVT_N RVT-GII GIIM McrA RVT-GII McrA STKc_PknB_like Feature: gene Location: 4077-4265 bp Feature: domain Description: GIIM Note: maturase Location: 4083-4245 bp Feature: domain Description: GIIM Note: maturase Location: 4083-4245 bp Feature: gene Location: 4290-4673 bp Feature: domain Description: McrA Location: 4332-4641 bp Feature: domain Description: McrA Location: 4332-4641 bp Feature: gene Location: 5271-6494 bp Feature: domain Description: RVT_N Location: 5304-5550 bp Feature: domain Description: RVT_N Location: 5304-5550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5601-6225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5601-6225 bp Feature: domain Description: GIIM Note: maturase Location: 6285-6411 bp Feature: domain Description: GIIM Note: maturase Location: 6285-6411 bp Feature: gene Location: 6497-6880 bp Feature: domain Description: McrA Location: 6548-6815 bp Feature: domain Description: McrA Location: 6548-6815 bp Feature: gene Location: 7289-7549 bp Feature: gene Location: 7708-8589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7798-8422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 7 98-8422 bp Feature: gene Location: 8600-9079 bp Feature: domain Description: McrA Location: 8666-9011 bp Feature: domain Description: McrA Location: 8666-9011 bp Feature: gene Location: 9191-9463 bp Feature: domain Description: STKc_PknB_like Location: 9233-9452 bp Feature: domain Description: STKc_PknB_like Location: 9233-9452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), RVT-GII, STKc_PknB_like (cd14014)

Seq: PRLH01000047.1 Cyanothece sp. BG0011 unitig_243, whole genome shotgun sequence (97094 bp)
Overview 1 RT 1: 3-4544 bp Neighborhood of RT #1 [3, 4552] RVT-GII RVT-GII GIIM McrA STKc_PknB_like HEAT_2 HEAT_2 HEAT_2 HEAT Feature: gene Location: 3-356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90-228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90-228 bp Feature: gene Location: 362-1369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38 9-713 bp Feature: domain Description: GIIM Note: maturase Location: 773-938 bp Feature: domain Description: GIIM Note: maturase Location: 773-938 bp Feature: domain Description: McrA Location: 959-1301 bp Feature: domain Description: McrA Location: 959-1301 bp Feature: gene Location: 1481-3403 bp Feature: domain Description: STKc_PknB_like Location: 1523-2336 bp Feature: domain Description: STKc_PknB_like Location: 1523-2336 bp Feature: gene Location: 3416-4552 bp Feature: domain Description: HEAT_2 Location: 3506-3749 bp Feature: domain Description: HEAT_2 Location: 3506-3749 bp Feature: domain Description: HEAT_2 Location: 3779-4016 bp Feature: domain Description: HEAT_2 Location: 3779-4016 bp Feature: domain Description: HEAT_2 Location: 4112-4286 bp Feature: domain Description: HEAT_2 Location: 4112-428 6 bp Feature: domain Description: HEAT Location: 4352-4544 bp Feature: domain Description: HEAT Location: 4352-4544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), STKc_PknB_like (cd14014), HEAT_2 (pfam13646), HEAT (sd00044)

Seq: PRLH01000105.1 Cyanothece sp. BG0011 unitig_34, whole genome shotgun sequence (31320 bp)
Overview 1 RT 1: 9487-16812 bp Neighborhood of RT #1 [9487, 16829] CHASE TMAO_torS PleD PRK13557 PleD RVT_N RVT-GII GIIM HNH COG2929 Feature: gene Location: 9487-12048 bp Feature: domain Description: CHASE Location: 9727-10249 bp Feature: domain Description: CHASE Location: 9 727-10249 bp Feature: domain Description: TMAO_torS Location: 10525-11776 bp Feature: domain Description: TMAO_torS Location: 10525-11776 bp Feature: gene Location: 12051-13502 bp Feature: domain Description: PleD Location: 12072-12483 bp Feature: domain Description: PleD Location: 12072-12483 bp Feature: domain Description: PRK13557 Location: 12525-12912 bp Feature: domain Description: PRK13557 Location: 12525-129 12 bp Feature: domain Description: PleD Location: 12915-13476 bp Feature: domain Description: PleD Location: 129 15-13476 bp Feature: gene Location: 14165-15967 bp Feature: domain Description: RVT_N Location: 14204-14450 bp Feature: domain Description: RVT_N Location: 14204-14450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14495-15188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1449 5-15188 bp Feature: domain Description: GIIM Note: maturase Location: 15308-15542 bp Feature: domain Description: GIIM Note: maturase Location: 15308-15542 bp Feature: domain Description: HNH Note: nucleases Location: 15752-15884 bp Feature: domain Description: HNH Note: nucleases Location: 15752-15884 bp Feature: gene Location: 16083-16526 bp Feature: gene Location: 16557-16829 bp Feature: domain Description: COG2929 Location: 16623-16812 bp Feature: domain Description: COG29 29 Location: 16623-16812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHASE (smart01079), TMAO_torS (TIGR02956), PleD (COG3706), PRK13557 (histidine kinase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG2929 (Uncharacterized conserved protein, DUF497 family )

Seq: PRLH01000099.1 Cyanothece sp. BG0011 unitig_50, whole genome shotgun sequence (37848 bp)
Overview 1 RT 1: 1272-7390 bp Neighborhood of RT #1 [1272, 7395] GlnA RVT_N RVT-GII GIIM McrA LysR CrcB Feature: gene Location: 1272-1901 bp Feature: gene Location: 2244-3665 bp Feature: domain Description: GlnA Location: 2265-3660 bp Feature: domain Description: GlnA Location: 2265-3660 bp Feature: gene Location: 4308-5822 bp Feature: domain Description: RVT_N Location: 4347-4593 bp Feature: domain Description: RVT_N Location: 4347-4593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4641-5235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4641-5235 bp Feature: domain Description: GIIM Note: maturase Location: 5292-5466 bp Feature: domain Description: GIIM Note: maturase Location: 5292-5466 bp Feature: domain Description: McrA Location: 5511-5790 bp Feature: domain Description: McrA Location: 5511-5790 bp Feature: gene Location: 5966-6925 bp Feature: domain Description: LysR Location: 5969-6872 bp Feature: domain Description: LysR Location: 5969-6872 bp Feature: gene Location: 6991-7395 bp Feature: domain Description: CrcB Location: 7033-7390 bp Feature: domain Description: CrcB Location: 7033-7390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA (TIGR00653), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), LysR (COG0583), CrcB (COG0239)

Seq: PRLH01000011.1 Cyanothece sp. BG0011 unitig_67, whole genome shotgun sequence (40171 bp)
Overview 1 RT 1: 1283-7251 bp Neighborhood of RT #1 [1283, 7251] GsiA RVT-GII GIIM HNHc YkfC RVT_N RVT-GII Feature: gene Location: 1283-1414 bp Feature: gene Location: 1707-3350 bp Feature: domain Description: GsiA Location: 1725-3336 bp Feature: domain Description: GsiA Location: 1725-3336 bp Feature: gene Location: 3460-4659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3568-3880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3568-3880 bp Feature: domain Description: GIIM Note: maturase Location: 4000-4234 bp Feature: domain Description: GIIM Note: maturase Location: 4000-4234 bp Feature: domain Description: HNHc Note: nucleases Location: 4417-4564 bp Feature: domain Description: HNHc Note: nucleases Location: 4417-4564 bp Feature: gene Location: 4665-4907 bp Feature: domain Description: YkfC Location: 4680-4875 bp Feature: domain Description: YkfC Location: 4680-4875 bp Feature: gene Location: 5496-6227 bp Feature: domain Description: RVT_N Location: 5535-5781 bp Feature: domain Description: RVT_N Location: 5535-5781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5826-6201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5826-6201 bp Feature: gene Location: 6612-6785 bp Feature: gene Location: 7015-7251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GsiA (COG1123), RVT-GII, GIIM (pfam08388), HNHc (smart00507), YkfC (COG3344), RVT_N (pfam13655)