myRT

myRT report for GCA_003014595.1_ASM301459v1

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Seq: PYGK01000001.1 Chitinophaga ginsengisoli strain DSM 18107 Ga0180988_101, whole genome shotgun sequence (1079156 bp)
Overview 1 RT 1: 963924-967352 bp Neighborhood of RT #1 [963924, 967387] RVT-GII GIIM clpX Feature: gene Location: 963924-964097 bp Feature: gene Location: 964223-964417 bp Feature: gene Location: 964501-965814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964837-965377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964837-965377 bp Feature: domain Description: GIIM Note: maturase Location: 965431-965647 bp Feature: domain Description: GIIM Note: maturase Location: 965431 -965647 bp Feature: gene Location: 965924-966130 bp Feature: gene Location: 966152-967387 bp Feature: domain Description: clpX Location: 966161-967352 bp Feature: domain Description: clpX Location: 9661 61 -967352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), clpX

Seq: PYGK01000008.1 Chitinophaga ginsengisoli strain DSM 18107 Ga0180988_108, whole genome shotgun sequence (337881 bp)
Overview 1 RT 1: 323006-327089 bp Neighborhood of RT #1 [323006, 327106] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII YkfC HNH LZ_Tnp_IS66 DDE_Tnp_IS66 Feature: gene Location: 323006-323134 bp Feature: gene Location: 323137-323688 bp Feature: domain Description: DDE_Tnp_IS66 Location: 323140-323533 bp Feature: domain Description: DDE_Tnp_IS66 Location: 32 3140-32 3533 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 323554-323665 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 32 3554-32 3665 bp Feature: gene Location: 323816-325573 bp Feature: RT Description: RVT_N Location: 323864-324107 bp Feature: RT Description: RVT_N Location: 32 3864-32 4107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324152-324830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 4152 -32 4830 bp Feature: domain Description: YkfC Location: 324932-325139 bp Feature: domain Description: YkfC Location: 32 4932 -32 5139 bp Feature: domain Description: HNH Note: nucleases Location: 325382-325514 bp Feature: domain Description: HNH Note: nucleases Location: 32 5382 -32 5514 bp Feature: gene Location: 325695-325967 bp Feature: gene Location: 326177-327106 bp Feature: domain Description: LZ_Tnp_IS66 Location: 326267-326504 bp Feature: domain Description: LZ_Tnp_IS66 Location: 32 62 67-32 6504 bp Feature: domain Description: DDE_Tnp_IS66 Location: 326696-327089 bp Feature: domain Description: DDE_Tnp_IS66 Location: 32 6696-32 7089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LZ_Tnp_IS66 (pfam13007)

Seq: PYGK01000009.1 Chitinophaga ginsengisoli strain DSM 18107 Ga0180988_109, whole genome shotgun sequence (308481 bp)
Overview 1 RT 1: 193803-199844 bp Neighborhood of RT #1 [193803, 202471] CypX RVT-Retrons WGR_DNA_ligase HEAT_2 Feature: gene Location: 193803-194921 bp Feature: domain Description: CypX Location: 193812-194910 bp Feature: domain Description: CypX Location: 193 812-194910 bp Feature: gene Location: 195189-195551 bp Feature: gene Location: 195648-197156 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 196191-196809 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 196191-196809 bp Feature: gene Location: 197590-199248 bp Feature: gene Location: 199259-202471 bp Feature: domain Description: WGR_DNA_ligase Location: 199274-199499 bp Feature: domain Description: WGR_DNA_ligase Location: 199274-199499 bp Feature: domain Description: HEAT_2 Location: 199634-199844 bp Feature: domain Description: HEAT_2 Location: 19963 4-199844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CypX (COG2124), RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646)

Seq: PYGK01000042.1 Chitinophaga ginsengisoli strain DSM 18107 Ga0180988_142, whole genome shotgun sequence (1998 bp)
Overview 1 RT 1: 173-1832 bp Neighborhood of RT #1 [173, 1915] RVT-GII GIIM Feature: gene Location: 173-307 bp Feature: gene Location: 614-1915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878-154 7 bp Feature: domain Description: GIIM Note: maturase Location: 1622-1832 bp Feature: domain Description: GIIM Note: maturase Location: 1622-1832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PYGK01000044.1 Chitinophaga ginsengisoli strain DSM 18107 Ga0180988_144, whole genome shotgun sequence (1874 bp)
Overview 1 RT 1: 86-1181 bp Neighborhood of RT #1 [86, 1357] RVT-GII GIIM Feature: gene Location: 86-1357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287-905 bp Feature: domain Description: GIIM Note: maturase Location: 959-1181 bp Feature: domain Description: GIIM Note: maturase Location: 95 9-1181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)