myRT

myRT report for GCA_003015325.1_ASM301532v1

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Seq: PVMG01000001.1 Escherichia coli strain 03-3375 contig1_03-3375, whole genome shotgun sequence (5199239 bp)
Overview 1 RT 1: 3633439-3637544 bp 2 RT 2: 4166408-4170101 bp Neighborhood of RT #1 [3633439, 3637544] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Neighborhood of RT #2 [4166408, 4170101] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 3633439-3633684 bp Feature: gene Location: 3633684-3634070 bp Feature: domain Description: DUF932 Location: 3633690-3634035 bp Feature: domain Description: DUF932 Location: 3633690-3634035 bp Feature: gene Location: 3634243-3636021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634504-3635299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3634504-3635299 bp Feature: domain Description: Intron_maturas2 Location: 3635425-3635650 bp Feature: domain Description: Intron_maturas2 Location: 3635425-3635650 bp Feature: domain Description: HNHc Note: nucleases Location: 3635845-3635995 bp Feature: domain Description: HNHc Note: nucleases Location: 3635845-3635995 bp Feature: gene Location: 3636513-3636914 bp Feature: domain Description: DUF932 Location: 3636624-3636906 bp Feature: domain Description: DUF932 Location: 3636624-3636906 bp Feature: gene Location: 3637134-3637544 bp Feature: gene Location: 4166408-4166623 bp Feature: gene Location: 4166714-4166995 bp Feature: domain Description: HTH_XRE Location: 4166729-4166894 bp Feature: domain Description: HTH_XRE Location: 41 66729-41 66894 bp Feature: gene Location: 4166988-4168088 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4167129-4167684 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 671 29-41 67684 bp Feature: gene Location: 4168165-4169667 bp Feature: domain Description: PRK13889 Location: 4168168-4168756 bp Feature: domain Description: PRK1 3889 Location: 41 681 68-41 68756 bp Feature: gene Location: 4169898-4170101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)