myRT

myRT report for GCA_003015365.1_ASM301536v1

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Seq: PVZZ01000001.1 Escherichia coli strain 2012C-4196 contig1_2012C-4196, whole genome shotgun sequence (3847435 bp)
Overview 1 RT 1: 3652684-3656789 bp Neighborhood of RT #1 [3652684, 3656789] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 3652684-3653094 bp Feature: gene Location: 3653314-3653715 bp Feature: domain Description: DUF932 Location: 3653425-3653707 bp Feature: domain Description: DUF932 Location: 3653425-3653707 bp Feature: gene Location: 3654207-3655985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3654468-3655263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3654468-3655263 bp Feature: domain Description: Intron_maturas2 Location: 3655389-3655614 bp Feature: domain Description: Intron_maturas2 Location: 3655389-365561 4 bp Feature: domain Description: HNHc Note: nucleases Location: 3655809-3655959 bp Feature: domain Description: HNHc Note: nucleases Location: 3655809-3655959 bp Feature: gene Location: 3656158-3656544 bp Feature: domain Description: DUF932 Location: 3656164-3656509 bp Feature: domain Description: DUF932 Location: 36561 64-3656509 bp Feature: gene Location: 3656544-3656789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PVZZ01000002.1 Escherichia coli strain 2012C-4196 contig2_2012C-4196, whole genome shotgun sequence (1375699 bp)
Overview 1 RT 1: 383274-386967 bp Neighborhood of RT #1 [383274, 386967] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 383274-383489 bp Feature: gene Location: 383580-383861 bp Feature: domain Description: HTH_XRE Location: 383595-383760 bp Feature: domain Description: HTH_XRE Location: 383595-383760 bp Feature: gene Location: 383854-384954 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 383995-384550 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 383995-384550 bp Feature: gene Location: 385031-386533 bp Feature: domain Description: PRK13889 Location: 385034-385622 bp Feature: domain Description: PRK13889 Location: 385034-38562 2 bp Feature: gene Location: 386764-386967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)