myRT

myRT report for GCA_003017885.1_ASM301788v1

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Seq: CP027328.1 Escherichia coli strain 2014C-3741 chromosome (5394779 bp)
Overview 1 RT 1: 12212-16251 bp 2 RT 2: 1099709-1103883 bp 3 RT 3: 3848545-3852848 bp Neighborhood of RT #1 [12212, 16253] DUF932 RVT-GII Intron_maturas2 HNHc DUF932 Antirestrict Neighborhood of RT #2 [1099709, 1103885] RVT_N RVT-GII YkfC HNH sspA SspB Neighborhood of RT #3 [3848545, 3852848] HTH_1 PBP2_CrgA_like_5 PotE RVT_N RVT-GII YkfC HNH Feature: gene Location: 12212-12358 bp Feature: gene Location: 12448-12849 bp Feature: domain Description: DUF932 Location: 12559-12841 bp Feature: domain Description: DUF932 Location: 1 2559-1 2841 bp Feature: gene Location: 13341-15119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13602-14397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3602-1 4397 bp Feature: domain Description: Intron_maturas2 Location: 14523-14748 bp Feature: domain Description: Intron_maturas2 Location: 1 4523-1 4748 bp Feature: domain Description: HNHc Note: nucleases Location: 14943-15093 bp Feature: domain Description: HNHc Note: nucleases Location: 1 4943-1 5093 bp Feature: gene Location: 15292-15678 bp Feature: domain Description: DUF932 Location: 15298-15643 bp Feature: domain Description: DUF932 Location: 1 5298-1 5643 bp Feature: gene Location: 15768-16253 bp Feature: domain Description: Antirestrict Location: 15966-16251 bp Feature: domain Description: Antirestrict Location: 1 5966-1 6251 bp Feature: gene Location: 1099709-1099972 bp Feature: gene Location: 1099995-1100240 bp Feature: gene Location: 1100543-1102276 bp Feature: RT Description: RVT_N Location: 1100621-1100864 bp Feature: RT Description: RVT_N Location: 1 1 00621 -1 1 00864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1100909-1101551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 00909-1 1 01 551 bp Feature: domain Description: YkfC Location: 1101677-1101893 bp Feature: domain Description: YkfC Location: 1 1 01 677-1 1 01 893 bp Feature: domain Description: HNH Note: nucleases Location: 1102088-1102223 bp Feature: domain Description: HNH Note: nucleases Location: 1 1 02088-1 1 02223 bp Feature: gene Location: 1102744-1103382 bp Feature: domain Description: sspA Location: 1102747-1103377 bp Feature: domain Description: sspA Location: 1 1 02747-1 1 03377 bp Feature: gene Location: 1103388-1103885 bp Feature: domain Description: SspB Location: 1103397-1103883 bp Feature: domain Description: SspB Location: 1 1 03397-1 1 03883 bp Feature: gene Location: 3848545-3849453 bp Feature: domain Description: HTH_1 Location: 3848566-3848734 bp Feature: domain Description: HTH_1 Location: 3848566-3848734 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 3848818-3849409 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 384881 8-3849409 bp Feature: gene Location: 3849454-3850275 bp Feature: domain Description: PotE Location: 3849526-3850237 bp Feature: domain Description: PotE Location: 3849526-3850237 bp Feature: gene Location: 3850281-3852014 bp Feature: RT Description: RVT_N Location: 3850359-3850602 bp Feature: RT Description: RVT_N Location: 3850359-3850602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850647-3851289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3850647-3851 289 bp Feature: domain Description: YkfC Location: 3851415-3851631 bp Feature: domain Description: YkfC Location: 3851 41 5-3851 631 bp Feature: domain Description: HNH Note: nucleases Location: 3851826-3851961 bp Feature: domain Description: HNH Note: nucleases Location: 3851 826-3851 961 bp Feature: gene Location: 3852270-3852500 bp Feature: gene Location: 3852585-3852848 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Antirestrict (pfam03230), RVT_N (pfam13655), YkfC (COG3344), HNH (pfam01844), sspA (PRK09481), SspB (pfam04386)
HTH_1 (pfam00126), PBP2_CrgA_like_5 (cd08474), PotE (COG0531)