myRT

myRT report for GCA_003018295.1_ASM301829v1

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Seq: CP027520.1 Escherichia coli strain 89-3506 chromosome (5178486 bp)
Overview 1 RT 1: 2049459-2053338 bp Neighborhood of RT #1 [2049459, 2053343] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 2049459-2049917 bp Feature: domain Description: dut Location: 2049465-2049912 bp Feature: domain Description: dut Location: 2049465-204991 2 bp Feature: gene Location: 2050024-2050620 bp Feature: domain Description: slmA Location: 2050030-2050606 bp Feature: domain Description: slmA Location: 2050030-2050606 bp Feature: gene Location: 2050664-2051623 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2050799-2051348 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2050799-2051 348 bp Feature: gene Location: 2051920-2052576 bp Feature: domain Description: pyrE Location: 2051938-2052571 bp Feature: domain Description: pyrE Location: 2051 938-2052571 bp Feature: gene Location: 2052627-2053343 bp Feature: domain Description: rph Location: 2052630-2053338 bp Feature: domain Description: rph Location: 2052630-2053338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: CP027521.1 Escherichia coli strain 89-3506 plasmid unnamed1 (160231 bp)
Overview 1 RT 1: 77490-80659 bp 2 RT 2: 140366-144558 bp Neighborhood of RT #1 [77490, 80667] PHA02517 RVT-GII YkfC HlyC Neighborhood of RT #2 [140366, 144558] PRK09183 RVT_N RVT-GII RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 77490-77909 bp Feature: domain Description: PHA02517 Location: 77493-77898 bp Feature: domain Description: PHA02 517 Location: 77493-77898 bp Feature: gene Location: 78079-78210 bp Feature: gene Location: 78390-79001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78423-78861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7842 3-78861 bp Feature: gene Location: 79063-80079 bp Feature: domain Description: YkfC Location: 79759-80029 bp Feature: domain Description: YkfC Location: 79759-8002 9 bp Feature: gene Location: 80335-80667 bp Feature: domain Description: HlyC Location: 80356-80659 bp Feature: domain Description: HlyC Location: 80356-80659 bp Feature: gene Location: 140366-141145 bp Feature: domain Description: PRK09183 Location: 140372-141143 bp Feature: domain Description: PRK09183 Location: 140372 -141143 bp Feature: gene Location: 141515-141655 bp Feature: gene Location: 141677-142411 bp Feature: RT Description: RVT_N Location: 141734-141971 bp Feature: RT Description: RVT_N Location: 141734-141971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142022-142388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 02 2 -142 388 bp Feature: gene Location: 142479-143402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142491-142671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 491-142 671 bp Feature: domain Description: GIIM Note: maturase Location: 142725-142956 bp Feature: domain Description: GIIM Note: maturase Location: 142 72 5-142 956 bp Feature: domain Description: HNHc Note: nucleases Location: 143187-143346 bp Feature: domain Description: HNHc Note: nucleases Location: 143187-143346 bp Feature: gene Location: 143479-144381 bp Feature: domain Description: DUF1281 Location: 143548-144076 bp Feature: domain Description: DUF12 81 Location: 143548-144076 bp Feature: domain Description: DUF1281_C Location: 144082-144322 bp Feature: domain Description: DUF12 81_C Location: 144082 -14432 2 bp Feature: gene Location: 144385-144558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344), HlyC (pfam02794), PRK09183 (transposase/IS protein; Provisional), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)