myRT

myRT report for GCA_003023825.1_ASM302382v1

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Seq: PYBS01000018.1 Lactobacillus plantarum strain JDARSH NODE_18_length_55350_cov_17.5841, whole genome shotgun sequence (55350 bp)
Overview 1 RT 1: 32225-35465 bp Neighborhood of RT #1 [32225, 35465] gpmA RVT-Retrons Feature: gene Location: 32225-32440 bp Feature: domain Description: gpmA Location: 32228-32432 bp Feature: domain Description: gpmA Location: 32228-32432 bp Feature: gene Location: 32730-33713 bp Feature: gene Location: 33786-34730 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33915-34461 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3391 5-34461 bp Feature: gene Location: 35032-35184 bp Feature: gene Location: 35337-35465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gpmA (PRK14120), RVT-Retrons

Seq: PYBS01000020.1 Lactobacillus plantarum strain JDARSH NODE_20_length_32953_cov_53.5594, whole genome shotgun sequence (32953 bp)
Overview 1 RT 1: 22561-26544 bp Neighborhood of RT #1 [22561, 26544] HTH_ARSR DDE_Tnp_Tn3 RVT-GII GIIM PRK09564 Feature: gene Location: 22561-22914 bp Feature: domain Description: HTH_ARSR Location: 22621-22834 bp Feature: domain Description: HTH_ARSR Location: 2 2 62 1-2 2 834 bp Feature: gene Location: 23120-23461 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 23126-23393 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2 312 6-2 3393 bp Feature: gene Location: 23712-24527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23715-24081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3715-2 4081 bp Feature: domain Description: GIIM Note: maturase Location: 24135-24363 bp Feature: domain Description: GIIM Note: maturase Location: 2 4135-2 4363 bp Feature: gene Location: 24662-26026 bp Feature: domain Description: PRK09564 Location: 24677-26000 bp Feature: domain Description: PRK09564 Location: 2 4677-2 6000 bp Feature: gene Location: 26158-26544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), PRK09564 (coenzyme A disulfide reductase; Reviewed)