myRT

myRT report for GCA_003024315.1_ASM302431v1

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Seq: PXVX01000029.1 Escherichia coli strain PairA_ch_2 NODE_17_length_37321_cov_20.9302_ID_33, whole genome shotgun sequence (37321 bp)
Overview 1 RT 1: 16920-20761 bp Neighborhood of RT #1 [16920, 20859] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 16920-17072 bp Feature: domain Description: rve_2 Location: 16950-17058 bp Feature: domain Description: rve_2 Location: 1 6950-1 7058 bp Feature: gene Location: 17345-17650 bp Feature: gene Location: 17693-19081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18023-18641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8023-1 8641 bp Feature: domain Description: GIIM Note: maturase Location: 18689-18920 bp Feature: domain Description: GIIM Note: maturase Location: 1 8689-1 8920 bp Feature: gene Location: 19468-20082 bp Feature: domain Description: InsG Location: 19471-20062 bp Feature: domain Description: InsG Location: 1 9471 -20062 bp Feature: gene Location: 20086-20859 bp Feature: domain Description: Transposase_20 Location: 20515-20761 bp Feature: domain Description: Transposase_20 Location: 2051 5-20761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: PXVX01000035.1 Escherichia coli strain PairA_ch_2 NODE_23_length_18637_cov_22.0508_ID_45, whole genome shotgun sequence (18637 bp)
Overview 1 RT 1: 2470-10592 bp Neighborhood of RT #1 [2470, 10615] FHA_bHelix FHA_bHelix RVT-GII RVT-GII PHA02517 COG3436 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 2470-3417 bp Feature: domain Description: FHA_bHelix Location: 2479-2920 bp Feature: domain Description: FHA_bHelix Location: 2 479-2 92 0 bp Feature: domain Description: FHA_bHelix Location: 3280-3391 bp Feature: domain Description: FHA_bHelix Location: 32 80-3391 bp Feature: gene Location: 3704-3907 bp Feature: gene Location: 4028-4840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4301-4757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4301-4757 bp Feature: gene Location: 4856-5230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4862-5033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4862 -5033 bp Feature: gene Location: 5237-5653 bp Feature: gene Location: 5715-5873 bp Feature: domain Description: PHA02517 Location: 5718-5820 bp Feature: domain Description: PHA02 517 Location: 5718-582 0 bp Feature: gene Location: 7229-8305 bp Feature: domain Description: COG3436 Location: 7541-8012 bp Feature: domain Description: COG3436 Location: 7541-8012 bp Feature: gene Location: 8281-8670 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8386-8629 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8386-862 9 bp Feature: gene Location: 9122-9832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9323-9824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932 3-982 4 bp Feature: gene Location: 9981-10352 bp Feature: domain Description: GIIM Note: maturase Location: 10053-10275 bp Feature: domain Description: GIIM Note: maturase Location: 10053-102 75 bp Feature: gene Location: 10469-10615 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 10481-10592 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 10481-10592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FHA_bHelix (sd00046), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66_C (pfam13817), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), GIIM (pfam08388)