myRT

myRT report for GCA_003024355.1_ASM302435v1

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Seq: PXWC01000012.1 Escherichia coli strain PairA_hh_1 NODE_16_length_37321_cov_27.7172_ID_31, whole genome shotgun sequence (37321 bp)
Overview 1 RT 1: 16920-20761 bp Neighborhood of RT #1 [16920, 20859] rve_2 RVT-GII GIIM InsG Transposase_20 Feature: gene Location: 16920-17072 bp Feature: domain Description: rve_2 Location: 16950-17058 bp Feature: domain Description: rve_2 Location: 1 6950-1 7058 bp Feature: gene Location: 17345-17650 bp Feature: gene Location: 17693-19081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18023-18641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8023-1 8641 bp Feature: domain Description: GIIM Note: maturase Location: 18689-18920 bp Feature: domain Description: GIIM Note: maturase Location: 1 8689-1 8920 bp Feature: gene Location: 19468-20082 bp Feature: domain Description: InsG Location: 19471-20062 bp Feature: domain Description: InsG Location: 1 9471 -20062 bp Feature: gene Location: 20086-20859 bp Feature: domain Description: Transposase_20 Location: 20515-20761 bp Feature: domain Description: Transposase_20 Location: 2051 5-20761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), InsG (COG3385), Transposase_20 (pfam02371)

Seq: PXWC01000003.1 Escherichia coli strain PairA_hh_1 NODE_19_length_28839_cov_29.3781_ID_37, whole genome shotgun sequence (28839 bp)
Overview 1 RT 1: 2250-10630 bp Neighborhood of RT #1 [2250, 10653] FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix RVT-GII RVT-GII PHA02517 COG3436 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 2250-3455 bp Feature: domain Description: FHA_bHelix Location: 2268-2499 bp Feature: domain Description: FHA_bHelix Location: 2 2 68-2 499 bp Feature: domain Description: fil_hemag_20aa Location: 2502-2622 bp Feature: domain Description: fil_hemag_2 0aa Location: 2 502 -2 62 2 bp Feature: domain Description: FHA_bHelix Location: 2733-3099 bp Feature: domain Description: FHA_bHelix Location: 2 733-3099 bp Feature: domain Description: FHA_bHelix Location: 3318-3426 bp Feature: domain Description: FHA_bHelix Location: 3318-342 6 bp Feature: gene Location: 3742-3945 bp Feature: gene Location: 4066-4878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4339-4795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4339-4795 bp Feature: gene Location: 4894-5268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4900-5071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4900-5071 bp Feature: gene Location: 5275-5691 bp Feature: gene Location: 5783-5911 bp Feature: domain Description: PHA02517 Location: 5786-5858 bp Feature: domain Description: PHA02 517 Location: 5786-5858 bp Feature: gene Location: 7267-8343 bp Feature: domain Description: COG3436 Location: 7579-8050 bp Feature: domain Description: COG3436 Location: 7579-8050 bp Feature: gene Location: 8319-8708 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8424-8667 bp Feature: domain Description: DDE_Tnp_IS66 Location: 842 4-8667 bp Feature: gene Location: 9160-9870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9361-9862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9361-9862 bp Feature: gene Location: 10019-10390 bp Feature: domain Description: GIIM Note: maturase Location: 10091-10313 bp Feature: domain Description: GIIM Note: maturase Location: 10091-10313 bp Feature: gene Location: 10507-10653 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 10519-10630 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 10519-10630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050)