myRT

myRT report for GCA_003024655.1_ASM302465v1

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Seq: PYII01000002.1 [Clostridium] lavalense strain KCTC 15153 scaffold_1, whole genome shotgun sequence (422881 bp)
Overview 1 RT 1: 275-7883 bp 2 RT 2: 406477-409153 bp Neighborhood of RT #1 [275, 7883] AE_Prim_S_like RVT-UG10 TrmA Neighborhood of RT #2 [406477, 409158] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 275-427 bp Feature: gene Location: 618-1994 bp Feature: gene Location: 1966-4554 bp Feature: domain Description: AE_Prim_S_like Location: 2167-2515 bp Feature: domain Description: AE_Prim_S_like Location: 21 67-251 5 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 3346-3973 bp Feature: RT Description: RVT-UG1 0 Note: UG1 0 RT Location: 3346-3973 bp Feature: gene Location: 4786-6240 bp Feature: domain Description: TrmA Location: 4798-6151 bp Feature: domain Description: TrmA Location: 4798-61 51 bp Feature: gene Location: 6678-7883 bp Feature: gene Location: 406477-406773 bp Feature: domain Description: Phage_holin_5_2 Location: 406525-406756 bp Feature: domain Description: Phage_holin_5_2 Location: 406525-406756 bp Feature: gene Location: 406785-407123 bp Feature: gene Location: 407126-408322 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 407321-408038 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 407321 -408038 bp Feature: gene Location: 408533-409018 bp Feature: gene Location: 409015-409158 bp Feature: domain Description: Phage_XkdX Location: 409036-409153 bp Feature: domain Description: Phage_XkdX Location: 409036-4091 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AE_Prim_S_like (cl01287), RVT-UG10, TrmA (COG2265), Phage_holin_5_2 (pfam16079), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: PYII01000013.1 [Clostridium] lavalense strain KCTC 15153 scaffold_12, whole genome shotgun sequence (152885 bp)
Overview 1 RT 1: 75480-79327 bp Neighborhood of RT #1 [75480, 79327] RVT-DGRs Feature: gene Location: 75480-75707 bp Feature: gene Location: 75791-77086 bp Feature: gene Location: 77435-78673 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 77762-78335 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 77762 -78335 bp Feature: gene Location: 78633-78983 bp Feature: gene Location: 79133-79327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: PYII01000014.1 [Clostridium] lavalense strain KCTC 15153 scaffold_13, whole genome shotgun sequence (279259 bp)
Overview 1 RT 1: 47510-51738 bp Neighborhood of RT #1 [47510, 51738] RVT-DGRs Feature: gene Location: 47510-47764 bp Feature: gene Location: 47841-49160 bp Feature: gene Location: 49559-50761 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49850-50465 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 49850-50465 bp Feature: gene Location: 51187-51414 bp Feature: gene Location: 51466-51738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: PYII01000025.1 [Clostridium] lavalense strain KCTC 15153 scaffold_24, whole genome shotgun sequence (88542 bp)
Overview 1 RT 1: 85637-88538 bp Neighborhood of RT #1 [85637, 88540] HTH_ARSR CpaA CpaA RVT-GII GIIM Feature: gene Location: 85637-85990 bp Feature: domain Description: HTH_ARSR Location: 85787-85940 bp Feature: domain Description: HTH_ARSR Location: 85787-8594 0 bp Feature: gene Location: 86227-86883 bp Feature: domain Description: CpaA Location: 86239-86407 bp Feature: domain Description: CpaA Location: 86239-864 07 bp Feature: domain Description: CpaA Location: 86494-86695 bp Feature: domain Description: CpaA Location: 864 94 -86695 bp Feature: gene Location: 87422-88540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87737-88364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87737-88364 bp Feature: domain Description: GIIM Note: maturase Location: 88418-88538 bp Feature: domain Description: GIIM Note: maturase Location: 884 18-88538 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARSR (smart00418), CpaA (COG4960), RVT-GII, GIIM (pfam08388)

Seq: PYII01000031.1 [Clostridium] lavalense strain KCTC 15153 scaffold_30, whole genome shotgun sequence (106289 bp)
Overview 1 RT 1: 102450-105872 bp Neighborhood of RT #1 [102450, 105872] RimL DUF3800 RVT-GII GIIM RVT-GII Feature: gene Location: 102450-102992 bp Feature: domain Description: RimL Location: 102474-102918 bp Feature: domain Description: RimL Location: 102474-102918 bp Feature: gene Location: 103092-103706 bp Feature: domain Description: DUF3800 Location: 103122-103668 bp Feature: domain Description: DUF3800 Location: 103122-103668 bp Feature: gene Location: 104111-104860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104114-104411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104114-104411 bp Feature: domain Description: GIIM Note: maturase Location: 104465-104684 bp Feature: domain Description: GIIM Note: maturase Location: 104465 -104684 bp Feature: gene Location: 105002-105502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105317-105494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105 317-105 494 bp Feature: gene Location: 105588-105872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), DUF3800 (pfam12686), RVT-GII, GIIM (pfam08388)

Seq: PYII01000069.1 [Clostridium] lavalense strain KCTC 15153 scaffold_69, whole genome shotgun sequence (1900 bp)
Overview 1 RT 1: 92-1653 bp Neighborhood of RT #1 [92, 1829] RVT-GII GIIM Feature: gene Location: 92-223 bp Feature: gene Location: 438-1829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753-1380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753-1380 bp Feature: domain Description: GIIM Note: maturase Location: 1434-1653 bp Feature: domain Description: GIIM Note: maturase Location: 1434-16 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)