myRT

myRT report for GCA_003024805.1_ASM302480v1

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Seq: PUEC01000001.1 Duncaniella muris strain DSM 103720 seq1, whole genome shotgun sequence (195595 bp)
Overview 1 RT 1: 28567-40460 bp Neighborhood of RT #1 [28567, 40460] RVT-DGRs DUF4376 Feature: gene Location: 28567-29202 bp Feature: gene Location: 29199-37622 bp Feature: gene Location: 37918-39402 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38299-38902 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38299-38902 bp Feature: gene Location: 39487-39978 bp Feature: domain Description: DUF4376 Location: 39679-39952 bp Feature: domain Description: DUF4376 Location: 39679-39952 bp Feature: gene Location: 39975-40460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF4376 (pfam14301)

Seq: PUEC01000018.1 Duncaniella muris strain DSM 103720 seq18, whole genome shotgun sequence (76496 bp)
Overview 1 RT 1: 43981-53211 bp Neighborhood of RT #1 [43981, 53211] DUF1896 TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Relaxase Relaxase RVT-GII Intron_maturas2 Feature: gene Location: 43981-44436 bp Feature: domain Description: DUF1896 Location: 44017-44434 bp Feature: domain Description: DUF1896 Location: 44017-44434 bp Feature: gene Location: 44459-45895 bp Feature: domain Description: TraG-D_C Location: 45266-45599 bp Feature: domain Description: TraG-D_C Location: 452 66-45599 bp Feature: gene Location: 45882-47693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46146-46968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46146-46968 bp Feature: domain Description: Intron_maturas2 Location: 47043-47349 bp Feature: domain Description: Intron_maturas2 Location: 47043-47349 bp Feature: domain Description: HNHc Note: nucleases Location: 47523-47667 bp Feature: domain Description: HNHc Note: nucleases Location: 4752 3-47667 bp Feature: gene Location: 48231-48947 bp Feature: domain Description: YWFCY Location: 48240-48414 bp Feature: domain Description: YWFCY Location: 482 40-48414 bp Feature: gene Location: 48963-50222 bp Feature: domain Description: Relaxase Location: 49074-49410 bp Feature: domain Description: Relaxase Location: 49074-49410 bp Feature: domain Description: Relaxase Location: 49716-49962 bp Feature: domain Description: Relaxase Location: 49716-49962 bp Feature: gene Location: 50304-52112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50568-51390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50568-51390 bp Feature: domain Description: Intron_maturas2 Location: 51504-51780 bp Feature: domain Description: Intron_maturas2 Location: 51504-51780 bp Feature: gene Location: 52125-52619 bp Feature: gene Location: 52786-53211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293), Relaxase (pfam03432)

Seq: PUEC01000032.1 Duncaniella muris strain DSM 103720 seq32, whole genome shotgun sequence (32079 bp)
Overview 1 RT 1: 5785-8910 bp Neighborhood of RT #1 [5785, 8987] DUF4134 RVT-GII Intron_maturas2 DUF4134 DUF4133 Feature: gene Location: 5785-6054 bp Feature: domain Description: DUF4134 Location: 5866-6043 bp Feature: domain Description: DUF413 4 Location: 5866-6043 bp Feature: gene Location: 6092-6634 bp Feature: gene Location: 6631-8442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6895-7717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6895-7717 bp Feature: domain Description: Intron_maturas2 Location: 7828-8104 bp Feature: domain Description: Intron_maturas2 Location: 7828-8104 bp Feature: gene Location: 8439-8675 bp Feature: domain Description: DUF4134 Location: 8571-8670 bp Feature: domain Description: DUF413 4 Location: 8571-8670 bp Feature: gene Location: 8700-8987 bp Feature: domain Description: DUF4133 Location: 8730-8910 bp Feature: domain Description: DUF413 3 Location: 873 0-8910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), DUF4133 (pfam13571)

Seq: PUEC01000036.1 Duncaniella muris strain DSM 103720 seq36, whole genome shotgun sequence (20910 bp)
Overview 1 RT 1: 2-7054 bp Neighborhood of RT #1 [2, 8793] RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 2-166 bp Feature: gene Location: 179-1612 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 398-995 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 398-995 bp Feature: gene Location: 1816-2010 bp Feature: gene Location: 2035-8793 bp Feature: domain Description: Laminin_G_3 Location: 4450-4879 bp Feature: domain Description: Laminin_G_3 Location: 4 4 50-4 879 bp Feature: domain Description: CotH Location: 5674-5989 bp Feature: domain Description: CotH Location: 5674 -5989 bp Feature: domain Description: LRR_AMN1 Location: 6574-7054 bp Feature: domain Description: LRR_AMN1 Location: 6574 -7054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: PUEC01000009.1 Duncaniella muris strain DSM 103720 seq9, whole genome shotgun sequence (99678 bp)
Overview 1 RT 1: 85027-88651 bp Neighborhood of RT #1 [85027, 88651] RVT-DGRs Feature: gene Location: 85027-85410 bp Feature: gene Location: 85410-85838 bp Feature: gene Location: 85801-86958 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86104-86731 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 86104-86731 bp Feature: gene Location: 87028-87225 bp Feature: gene Location: 87290-88651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs