myRT

myRT report for GCA_003025415.1_ASM302541v1

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Seq: PYLY01000011.1 Photobacterium aquimaris strain DSM 23343 CFSAN065518_11, whole genome shotgun sequence (121332 bp)
Overview 1 RT 1: 119033-121331 bp Neighborhood of RT #1 [119033, 121331] lyz_P1 Phage_holin_2_3 RVT-UG17 Feature: gene Location: 119033-119533 bp Feature: domain Description: lyz_P1 Location: 119132-119531 bp Feature: domain Description: lyz_P1 Location: 1 1 91 32-1 1 9531 bp Feature: gene Location: 119511-119726 bp Feature: domain Description: Phage_holin_2_3 Location: 119520-119673 bp Feature: domain Description: Phage_holin_2_3 Location: 1 1 9520-1 1 9673 bp Feature: gene Location: 119865-121181 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 120090-120672 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 20090-1 20672 bp Feature: gene Location: 121188-121331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lyz_P1 (cd16901), Phage_holin_2_3 (pfam16080), RVT-UG17

Seq: PYLY01000020.1 Photobacterium aquimaris strain DSM 23343 CFSAN065518_20, whole genome shotgun sequence (73993 bp)
Overview 1 RT 1: 65702-70765 bp Neighborhood of RT #1 [65702, 70788] RVT_N RVT-GII GIIM DacC Feature: gene Location: 65702-66628 bp Feature: gene Location: 67145-67291 bp Feature: gene Location: 67304-68776 bp Feature: domain Description: RVT_N Location: 67352-67595 bp Feature: domain Description: RVT_N Location: 67352 -67595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67640-68267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67640-682 67 bp Feature: domain Description: GIIM Note: maturase Location: 68327-68552 bp Feature: domain Description: GIIM Note: maturase Location: 6832 7-68552 bp Feature: gene Location: 68799-68990 bp Feature: gene Location: 69409-70788 bp Feature: domain Description: DacC Location: 69697-70765 bp Feature: domain Description: DacC Location: 69697-70765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DacC (COG1686)

Seq: PYLY01000050.1 Photobacterium aquimaris strain DSM 23343 CFSAN065518_50, whole genome shotgun sequence (27086 bp)
Overview 1 RT 1: 23559-26439 bp Neighborhood of RT #1 [23559, 26663] Pepdidase_M14_N M14_PaCCP-like RVT_N RVT-GII GIIM Feature: gene Location: 23559-24704 bp Feature: domain Description: Pepdidase_M14_N Location: 23568-23886 bp Feature: domain Description: Pepdidase_M14_N Location: 23 568-23 886 bp Feature: domain Description: M14_PaCCP-like Location: 23895-24675 bp Feature: domain Description: M14_PaCCP-like Location: 23 895-24675 bp Feature: gene Location: 24799-25008 bp Feature: gene Location: 25032-26663 bp Feature: domain Description: RVT_N Location: 25239-25482 bp Feature: domain Description: RVT_N Location: 2523 9-25482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25527-26154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25527-26154 bp Feature: domain Description: GIIM Note: maturase Location: 26214-26439 bp Feature: domain Description: GIIM Note: maturase Location: 26214-2643 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pepdidase_M14_N (pfam18027), M14_PaCCP-like (cd06234), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PYLY01000060.1 Photobacterium aquimaris strain DSM 23343 CFSAN065518_60, whole genome shotgun sequence (20484 bp)
Overview 1 RT 1: 194-4340 bp Neighborhood of RT #1 [194, 4504] BrnA_antitoxin COG2929 RVT-UG2 SR_Res_par Feature: gene Location: 194-403 bp Feature: domain Description: BrnA_antitoxin Location: 236-362 bp Feature: domain Description: BrnA_antitoxin Location: 236-362 bp Feature: gene Location: 396-692 bp Feature: domain Description: COG2929 Location: 411-678 bp Feature: domain Description: COG2929 Location: 4 11-678 bp Feature: gene Location: 1085-2395 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1286-2099 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1286-2099 bp Feature: gene Location: 2742-3686 bp Feature: gene Location: 3905-4504 bp Feature: domain Description: SR_Res_par Location: 3914-4340 bp Feature: domain Description: SR_Res_par Location: 3914 -4 34 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnA_antitoxin (pfam14384), COG2929 (Uncharacterized conserved protein, DUF497 family ), RVT-UG2, SR_Res_par (cd03767)

Seq: PYLY01000007.1 Photobacterium aquimaris strain DSM 23343 CFSAN065518_7, whole genome shotgun sequence (135750 bp)
Overview 1 RT 1: 103283-106996 bp 2 RT 2: 130826-133540 bp Neighborhood of RT #1 [103283, 107013] ParE_toxin RVT-Retrons PRK09738 DUF1525 Neighborhood of RT #2 [130826, 133540] TnpB_IS66 RVT_N RVT-GII Feature: gene Location: 103283-103627 bp Feature: domain Description: ParE_toxin Location: 103313-103583 bp Feature: domain Description: ParE_toxin Location: 103313-1035 83 bp Feature: gene Location: 104254-104505 bp Feature: gene Location: 104797-105753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104938-105490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 104938-105 490 bp Feature: gene Location: 105950-106192 bp Feature: domain Description: PRK09738 Location: 106043-106187 bp Feature: domain Description: PRK09738 Location: 106043-106187 bp Feature: gene Location: 106537-107013 bp Feature: domain Description: DUF1525 Location: 106678-106996 bp Feature: domain Description: DUF15 25 Location: 106678-106996 bp Feature: gene Location: 130826-131179 bp Feature: domain Description: TnpB_IS66 Location: 130853-131135 bp Feature: domain Description: TnpB_IS66 Location: 13085 3-131135 bp Feature: gene Location: 131176-131490 bp Feature: gene Location: 131567-132052 bp Feature: domain Description: RVT_N Location: 131657-131900 bp Feature: domain Description: RVT_N Location: 13165 7-131900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131945-132047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131945 -132047 bp Feature: gene Location: 132182-132397 bp Feature: gene Location: 133268-133540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE_toxin (pfam05016), RVT-Retrons, PRK09738 (small toxic polypeptide; Provisional), DUF1525 (pfam07511), TnpB_IS66 (pfam05717), RVT_N (pfam13655), RVT-GII