myRT

myRT report for GCA_003025515.1_ASM302551v1

Download annotations/find similar RTs

Seq: PYME01000001.1 Photobacterium gaetbulicola strain DSM 26887 CFSAN065512_1, whole genome shotgun sequence (373066 bp)
Overview 1 RT 1: 370762-372840 bp Neighborhood of RT #1 [370762, 373064] acr3 HTH_ARSR RVT-GII GIIM Feature: gene Location: 370762-371793 bp Feature: domain Description: acr3 Location: 370765-371752 bp Feature: domain Description: acr3 Location: 370765-371 752 bp Feature: gene Location: 371874-372218 bp Feature: domain Description: HTH_ARSR Location: 371904-372105 bp Feature: domain Description: HTH_ARSR Location: 371 904-3721 05 bp Feature: gene Location: 372330-373064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372333-372585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372333-372585 bp Feature: domain Description: GIIM Note: maturase Location: 372636-372840 bp Feature: domain Description: GIIM Note: maturase Location: 372636-372840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT acr3 (TIGR00832), HTH_ARSR (smart00418), RVT-GII, GIIM (pfam08388)

Seq: PYME01000023.1 Photobacterium gaetbulicola strain DSM 26887 CFSAN065512_23, whole genome shotgun sequence (96949 bp)
Overview 1 RT 1: 42721-51229 bp Neighborhood of RT #1 [42721, 51240] AlpA RVT-UG8 Arm-DNA-bind_3 INT_P4_C mutS1 Feature: gene Location: 42721-42954 bp Feature: domain Description: AlpA Location: 42736-42895 bp Feature: domain Description: AlpA Location: 42 736-42 895 bp Feature: gene Location: 43191-43676 bp Feature: gene Location: 43877-45823 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 44354-44795 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 44354-44795 bp Feature: gene Location: 47180-48460 bp Feature: domain Description: Arm-DNA-bind_3 Location: 47210-47456 bp Feature: domain Description: Arm-DNA-bind_3 Location: 472 10-47456 bp Feature: domain Description: INT_P4_C Location: 47906-48437 bp Feature: domain Description: INT_P4_C Location: 47906-48437 bp Feature: gene Location: 48667-51240 bp Feature: domain Description: mutS1 Location: 48697-51229 bp Feature: domain Description: mutS1 Location: 48697-512 2 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-UG8, Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801), mutS1 (TIGR01070)

Seq: PYME01000034.1 Photobacterium gaetbulicola strain DSM 26887 CFSAN065512_34, whole genome shotgun sequence (64137 bp)
Overview 1 RT 1: 19208-24337 bp Neighborhood of RT #1 [19208, 24339] RVT_N RVT-GII YkfC HNHc groEL groES Feature: gene Location: 19208-19369 bp Feature: gene Location: 19411-19656 bp Feature: gene Location: 19689-21362 bp Feature: domain Description: RVT_N Location: 19755-19998 bp Feature: domain Description: RVT_N Location: 19755-19998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20043-20688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20043 -20688 bp Feature: domain Description: YkfC Location: 20823-20994 bp Feature: domain Description: YkfC Location: 20823 -20994 bp Feature: domain Description: HNHc Note: nucleases Location: 21192-21351 bp Feature: domain Description: HNHc Note: nucleases Location: 21192-213 51 bp Feature: gene Location: 22361-24007 bp Feature: domain Description: groEL Location: 22367-23987 bp Feature: domain Description: groEL Location: 223 67-23 987 bp Feature: gene Location: 24049-24339 bp Feature: domain Description: groES Location: 24052-24337 bp Feature: domain Description: groES Location: 24052-243 3 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: PYME01000047.1 Photobacterium gaetbulicola strain DSM 26887 CFSAN065512_47, whole genome shotgun sequence (26602 bp)
Overview 1 RT 1: 1875-5318 bp Neighborhood of RT #1 [1875, 5383] Dimer_Tnp_Tn5 Tnp_DNA_bind DDE_Tnp_1 RVT-GII Tra5 DDE_Tnp_1 Feature: gene Location: 1875-2072 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1884-2046 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1884 -204 6 bp Feature: gene Location: 2075-3259 bp Feature: domain Description: Tnp_DNA_bind Location: 2108-2279 bp Feature: domain Description: Tnp_DNA_bind Location: 2108-2279 bp Feature: domain Description: DDE_Tnp_1 Location: 2561-3149 bp Feature: domain Description: DDE_Tnp_1 Location: 2561-314 9 bp Feature: gene Location: 3301-3705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3355-3538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3355-3538 bp Feature: gene Location: 4185-4760 bp Feature: domain Description: Tra5 Location: 4191-4593 bp Feature: domain Description: Tra5 Location: 4 191-4 593 bp Feature: gene Location: 4817-5383 bp Feature: domain Description: DDE_Tnp_1 Location: 4916-5318 bp Feature: domain Description: DDE_Tnp_1 Location: 4 916-5318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dimer_Tnp_Tn5 (pfam02281), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), RVT-GII, Tra5 (COG2801)

Seq: PYME01000048.1 Photobacterium gaetbulicola strain DSM 26887 CFSAN065512_48, whole genome shotgun sequence (26381 bp)
Overview 1 RT 1: 308-6229 bp Neighborhood of RT #1 [308, 6240] RVT_N RVT-GII GIIM Acetyltransf_1 RVT_N RVT-GII GIIM COG3981 Feature: gene Location: 308-1939 bp Feature: domain Description: RVT_N Location: 515-758 bp Feature: domain Description: RVT_N Location: 5 15 -75 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803-1430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 803-1430 bp Feature: domain Description: GIIM Note: maturase Location: 1490-1715 bp Feature: domain Description: GIIM Note: maturase Location: 1490-1715 bp Feature: gene Location: 2526-2999 bp Feature: domain Description: Acetyltransf_1 Location: 2631-2937 bp Feature: domain Description: Acetyltransf_1 Location: 2631-2937 bp Feature: gene Location: 3241-4872 bp Feature: domain Description: RVT_N Location: 3448-3691 bp Feature: domain Description: RVT_N Location: 3448-3691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3736-4363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3736-4363 bp Feature: domain Description: GIIM Note: maturase Location: 4423-4648 bp Feature: domain Description: GIIM Note: maturase Location: 4423-4648 bp Feature: gene Location: 5340-5531 bp Feature: gene Location: 5719-6240 bp Feature: domain Description: COG3981 Location: 5722-6229 bp Feature: domain Description: COG3981 Location: 5 722-6229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Acetyltransf_1 (pfam00583), COG3981 (Predicted acetyltransferase )

Seq: PYME01000068.1 Photobacterium gaetbulicola strain DSM 26887 CFSAN065512_68, whole genome shotgun sequence (1244 bp)
Overview 1 RT 1: 3-702 bp Neighborhood of RT #1 [3, 704] RVT-GII Feature: gene Location: 3-704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PYME01000009.1 Photobacterium gaetbulicola strain DSM 26887 CFSAN065512_9, whole genome shotgun sequence (211130 bp)
Overview 1 RT 1: 33069-36778 bp Neighborhood of RT #1 [33069, 36792] DUF2787 DUF2787 RVT-GII GIIM INT_C_like_3 AlpA Feature: gene Location: 33069-33563 bp Feature: domain Description: DUF2787 Location: 33108-33477 bp Feature: domain Description: DUF27 87 Location: 33108-3347 7 bp Feature: gene Location: 33544-33987 bp Feature: domain Description: DUF2787 Location: 33610-33979 bp Feature: domain Description: DUF27 87 Location: 33610-3397 9 bp Feature: gene Location: 34026-35339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34245-34860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34245-34860 bp Feature: domain Description: GIIM Note: maturase Location: 34911-35115 bp Feature: domain Description: GIIM Note: maturase Location: 34911-35115 bp Feature: gene Location: 36002-36562 bp Feature: domain Description: INT_C_like_3 Location: 36011-36539 bp Feature: domain Description: INT_C_like_3 Location: 36011-36539 bp Feature: gene Location: 36559-36792 bp Feature: domain Description: AlpA Location: 36595-36778 bp Feature: domain Description: AlpA Location: 36595-367 7 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2787 (pfam10980), RVT-GII, GIIM (pfam08388), INT_C_like_3 (cd01192), AlpA (COG3311)