myRT

myRT report for GCA_003025615.1_ASM302561v1

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Seq: PYMJ01000010.1 Photobacterium frigidiphilum strain JCM 12947 CFSAN065507_10, whole genome shotgun sequence (183398 bp)
Overview 1 RT 1: 19987-23638 bp Neighborhood of RT #1 [19987, 23638] HTH_XRE RVT-GII GIIM Feature: gene Location: 19987-20268 bp Feature: gene Location: 20321-20620 bp Feature: domain Description: HTH_XRE Location: 20357-20504 bp Feature: domain Description: HTH_XRE Location: 20357-20504 bp Feature: gene Location: 20782-22131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21061-21694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 061 -21 694 bp Feature: domain Description: GIIM Note: maturase Location: 21736-21940 bp Feature: domain Description: GIIM Note: maturase Location: 21 736-21 940 bp Feature: gene Location: 22748-23332 bp Feature: gene Location: 23492-23638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388)

Seq: PYMJ01000100.1 Photobacterium frigidiphilum strain JCM 12947 CFSAN065507_100, whole genome shotgun sequence (2165 bp)
Overview 1 RT 1: 241-1828 bp Neighborhood of RT #1 [241, 2052] RVT_N RVT-GII GIIM Feature: gene Location: 241-390 bp Feature: gene Location: 421-2052 bp Feature: domain Description: RVT_N Location: 628-871 bp Feature: domain Description: RVT_N Location: 62 8-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1543 bp Feature: domain Description: GIIM Note: maturase Location: 1603-1828 bp Feature: domain Description: GIIM Note: maturase Location: 1603-182 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PYMJ01000011.1 Photobacterium frigidiphilum strain JCM 12947 CFSAN065507_11, whole genome shotgun sequence (165664 bp)
Overview 1 RT 1: 134854-139844 bp Neighborhood of RT #1 [134854, 139864] TIGR02646 COG3950 RVT-Retrons Q PRK07509 Feature: gene Location: 134854-135504 bp Feature: domain Description: TIGR02646 Location: 134923-135274 bp Feature: domain Description: TIGR02646 Location: 13 4923 -13 5274 bp Feature: gene Location: 135507-137117 bp Feature: domain Description: COG3950 Location: 135690-137061 bp Feature: domain Description: COG3 950 Location: 13 5690-13 7061 bp Feature: gene Location: 137107-138090 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 137245-137842 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 7245-13 7842 bp Feature: gene Location: 138486-138986 bp Feature: domain Description: Q Location: 138489-138969 bp Feature: domain Description: Q Location: 13 8489-13 8969 bp Feature: gene Location: 139058-139864 bp Feature: domain Description: PRK07509 Location: 139070-139844 bp Feature: domain Description: PRK07509 Location: 13 9070-13 9844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, Q (PHA02536), PRK07509 (crotonase/enoyl-CoA hydratase family protein)

Seq: PYMJ01000047.1 Photobacterium frigidiphilum strain JCM 12947 CFSAN065507_47, whole genome shotgun sequence (35147 bp)
Overview 1 RT 1: 2197-5118 bp Neighborhood of RT #1 [2197, 5118] AmpC YoeB_toxin RVT-GII YjgH_like Feature: gene Location: 2197-3405 bp Feature: domain Description: AmpC Location: 2359-3352 bp Feature: domain Description: AmpC Location: 2359-3352 bp Feature: gene Location: 3718-3978 bp Feature: domain Description: YoeB_toxin Location: 3727-3967 bp Feature: domain Description: YoeB_toxin Location: 3727-3967 bp Feature: gene Location: 3996-4193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4098-4191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 098-4 191 bp Feature: gene Location: 4219-4422 bp Feature: domain Description: YjgH_like Location: 4276-4420 bp Feature: domain Description: YjgH_like Location: 4 276-4 4 20 bp Feature: gene Location: 4975-5118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AmpC (COG1680), YoeB_toxin (pfam06769), RVT-GII, YjgH_like (cd02198)

Seq: PYMJ01000071.1 Photobacterium frigidiphilum strain JCM 12947 CFSAN065507_71, whole genome shotgun sequence (8130 bp)
Overview 1 RT 1: 710-4240 bp Neighborhood of RT #1 [710, 4240] HigA RVT-UG15 Feature: gene Location: 710-1135 bp Feature: domain Description: HigA Location: 770-1133 bp Feature: domain Description: HigA Location: 770-1133 bp Feature: gene Location: 1193-1336 bp Feature: gene Location: 1383-2975 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1797-2199 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1797-2199 bp Feature: gene Location: 3219-3461 bp Feature: gene Location: 3485-4240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigA (COG5499), RVT-UG15

Seq: PYMJ01000073.1 Photobacterium frigidiphilum strain JCM 12947 CFSAN065507_73, whole genome shotgun sequence (6303 bp)
Overview 1 RT 1: 365-4409 bp Neighborhood of RT #1 [365, 4456] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 365-679 bp Feature: domain Description: InsE Location: 380-674 bp Feature: domain Description: InsE Location: 380-6 74 bp Feature: gene Location: 616-1098 bp Feature: domain Description: PHA02517 Location: 796-1075 bp Feature: domain Description: PHA02517 Location: 796 -1075 bp Feature: gene Location: 1739-3262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2012-2744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2012-2744 bp Feature: domain Description: GIIM Note: maturase Location: 2822-3017 bp Feature: domain Description: GIIM Note: maturase Location: 2822-3017 bp Feature: gene Location: 3372-3797 bp Feature: domain Description: PHA02517 Location: 3375-3792 bp Feature: domain Description: PHA02517 Location: 3375-3792 bp Feature: gene Location: 4028-4456 bp Feature: domain Description: COG3547 Location: 4052-4409 bp Feature: domain Description: COG3547 Location: 4052-4409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )