myRT

myRT report for GCA_003026165.1_ASM302616v1

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Seq: PYOB01000002.1 Photobacterium sp. GB-1 CFSAN065446_2, whole genome shotgun sequence (379004 bp)
Overview 1 RT 1: 306682-311740 bp Neighborhood of RT #1 [306682, 311754] DUF1883 TIR_2 RVT-Retrons TIR_2 SodA Feature: gene Location: 306682-307449 bp Feature: domain Description: DUF1883 Location: 306685-306946 bp Feature: domain Description: DUF1 883 Location: 306685-306946 bp Feature: domain Description: TIR_2 Location: 307048-307354 bp Feature: domain Description: TIR_2 Location: 307048-307354 bp Feature: gene Location: 307544-307807 bp Feature: gene Location: 308168-309763 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 308420-309032 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 308420-309032 bp Feature: domain Description: TIR_2 Location: 309368-309752 bp Feature: domain Description: TIR_2 Location: 309368-309752 bp Feature: gene Location: 310510-310959 bp Feature: gene Location: 311140-311754 bp Feature: domain Description: SodA Location: 311143-311740 bp Feature: domain Description: SodA Location: 31 1 1 43-31 1 740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1883 (pfam08980), TIR_2 (pfam13676), RVT-Retrons, SodA (COG0605)

Seq: PYOB01000051.1 Photobacterium sp. GB-1 CFSAN065446_50, whole genome shotgun sequence (2068 bp)
Overview 1 RT 1: 13-1261 bp Neighborhood of RT #1 [13, 1485] RVT_N RVT-GII GIIM Feature: gene Location: 13-1485 bp Feature: RT Description: RVT_N Location: 61-304 bp Feature: RT Description: RVT_N Location: 61-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-976 bp Feature: domain Description: GIIM Note: maturase Location: 1036-1261 bp Feature: domain Description: GIIM Note: maturase Location: 1036-12 61 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PYOB01000009.1 Photobacterium sp. GB-1 CFSAN065446_9, whole genome shotgun sequence (139245 bp)
Overview 1 RT 1: 79383-84380 bp Neighborhood of RT #1 [79383, 84380] Arabinose_bd AraC COG4628 RVT_N RVT-GII GIIM Feature: gene Location: 79383-80444 bp Feature: domain Description: Arabinose_bd Location: 79581-79851 bp Feature: domain Description: Arabinose_bd Location: 79581-79851 bp Feature: domain Description: AraC Location: 80064-80397 bp Feature: domain Description: AraC Location: 80064-803 97 bp Feature: gene Location: 80606-80827 bp Feature: domain Description: COG4628 Location: 80615-80822 bp Feature: domain Description: COG4628 Location: 80615-80822 bp Feature: gene Location: 81118-82632 bp Feature: RT Description: RVT_N Location: 81208-81451 bp Feature: RT Description: RVT_N Location: 81208-81451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81496-82123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81496-82123 bp Feature: domain Description: GIIM Note: maturase Location: 82183-82408 bp Feature: domain Description: GIIM Note: maturase Location: 82183 -82408 bp Feature: gene Location: 83335-83979 bp Feature: gene Location: 83979-84380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arabinose_bd (pfam12625), AraC (COG2207), COG4628 (Uncharacterized conserved protein, DUF2132 family ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)