myRT

myRT report for GCA_003026475.1_ASM302647v1

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Seq: PYMC01000001.1 Photobacterium lipolyticum strain DSM 16190 CFSAN065514_1, whole genome shotgun sequence (643997 bp)
Overview 1 RT 1: 503748-509344 bp Neighborhood of RT #1 [503748, 509355] sCache_2 Cache_2 Tar RVT_N RVT-GII NhaP Feature: gene Location: 503748-505820 bp Feature: domain Description: sCache_2 Location: 503964-504390 bp Feature: domain Description: sCache_2 Location: 503964-504390 bp Feature: domain Description: Cache_2 Location: 504396-504528 bp Feature: domain Description: Cache_2 Location: 504396-504528 bp Feature: domain Description: Tar Location: 504546-505818 bp Feature: domain Description: Tar Location: 504546-50581 8 bp Feature: gene Location: 506250-506465 bp Feature: gene Location: 506471-507247 bp Feature: domain Description: RVT_N Location: 506678-506921 bp Feature: domain Description: RVT_N Location: 506678-506921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506966-507182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 506966-5071 82 bp Feature: gene Location: 507603-507773 bp Feature: gene Location: 508147-509355 bp Feature: domain Description: NhaP Location: 508162-509344 bp Feature: domain Description: NhaP Location: 5081 62-509344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sCache_2 (pfam17200), Cache_2 (smart01049), Tar (COG0840), RVT_N (pfam13655), RVT-GII, NhaP (COG0025)

Seq: PYMC01000002.1 Photobacterium lipolyticum strain DSM 16190 CFSAN065514_2, whole genome shotgun sequence (568721 bp)
Overview 1 RT 1: 305448-312986 bp 2 RT 2: 564655-568153 bp Neighborhood of RT #1 [305448, 312991] IstB_IS21_ATP IstB_IS21 recD recD RVT_N RVT-GII GIIM TatD Neighborhood of RT #2 [564655, 568194] RVT-GII GIIM PHA02517 Feature: gene Location: 305448-306203 bp Feature: domain Description: IstB_IS21_ATP Location: 305520-305604 bp Feature: domain Description: IstB_IS2 1_ATP Location: 30552 0-305604 bp Feature: domain Description: IstB_IS21 Location: 305610-306135 bp Feature: domain Description: IstB_IS2 1 Location: 305610-306135 bp Feature: gene Location: 306246-309737 bp Feature: domain Description: recD Location: 307812-308895 bp Feature: domain Description: recD Location: 307812 -308895 bp Feature: domain Description: recD Location: 309036-309366 bp Feature: domain Description: recD Location: 309036-309366 bp Feature: gene Location: 310462-312048 bp Feature: domain Description: RVT_N Location: 310624-310867 bp Feature: domain Description: RVT_N Location: 31062 4-310867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310912-311539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310912 -311539 bp Feature: domain Description: GIIM Note: maturase Location: 311599-311824 bp Feature: domain Description: GIIM Note: maturase Location: 311599-31182 4 bp Feature: gene Location: 312097-312252 bp Feature: gene Location: 312266-312991 bp Feature: domain Description: TatD Location: 312269-312986 bp Feature: domain Description: TatD Location: 312 2 69-312 986 bp Feature: gene Location: 564655-565125 bp Feature: gene Location: 565294-565575 bp Feature: gene Location: 565657-567165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565915-566647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 565915-566647 bp Feature: domain Description: GIIM Note: maturase Location: 566767-566920 bp Feature: domain Description: GIIM Note: maturase Location: 566767-56692 0 bp Feature: gene Location: 567577-567789 bp Feature: gene Location: 567799-568194 bp Feature: domain Description: PHA02517 Location: 567817-568153 bp Feature: domain Description: PHA02 517 Location: 567817-568153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), recD (TIGR01447), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TatD (COG0084), PHA02517 (putative transposase OrfB; Reviewed)

Seq: PYMC01000003.1 Photobacterium lipolyticum strain DSM 16190 CFSAN065514_3, whole genome shotgun sequence (491298 bp)
Overview 1 RT 1: 485000-490977 bp Neighborhood of RT #1 [485000, 490982] PleD RVT_N RVT-GII RVT-GII GIIM STE14 COG3547 Feature: gene Location: 485000-485299 bp Feature: gene Location: 485719-487014 bp Feature: domain Description: PleD Location: 486421-486940 bp Feature: domain Description: PleD Location: 486421-486940 bp Feature: gene Location: 487787-488473 bp Feature: domain Description: RVT_N Location: 487934-488177 bp Feature: domain Description: RVT_N Location: 48793 4-488177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488222-488471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488222-488471 bp Feature: gene Location: 488507-489358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488513-488849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 488513 -488849 bp Feature: domain Description: GIIM Note: maturase Location: 488909-489131 bp Feature: domain Description: GIIM Note: maturase Location: 488909-48913 1 bp Feature: gene Location: 489555-490274 bp Feature: domain Description: STE14 Location: 489708-490263 bp Feature: domain Description: STE14 Location: 489708-490263 bp Feature: gene Location: 490593-490982 bp Feature: domain Description: COG3547 Location: 490611-490977 bp Feature: domain Description: COG3 547 Location: 490611-490977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PleD (COG3706), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), STE14 (COG2020), COG3547 (Transposase )

Seq: PYMC01000044.1 Photobacterium lipolyticum strain DSM 16190 CFSAN065514_44, whole genome shotgun sequence (1249 bp)
Overview 1 RT 1: 2-1215 bp Neighborhood of RT #1 [2, 1215] RVT-GII Feature: gene Location: 2-508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215-509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215-509 bp Feature: gene Location: 695-1009 bp Feature: gene Location: 1057-1215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PYMC01000005.1 Photobacterium lipolyticum strain DSM 16190 CFSAN065514_5, whole genome shotgun sequence (240284 bp)
Overview 1 RT 1: 91685-95807 bp 2 RT 2: 176786-180676 bp Neighborhood of RT #1 [91685, 95807] LysR LysR RVT-GII GIIM HTH_18 Neighborhood of RT #2 [176786, 180676] KOG2741 RVT-GII GIIM Feature: gene Location: 91685-92521 bp Feature: domain Description: LysR Location: 91703-92168 bp Feature: domain Description: LysR Location: 91703-92168 bp Feature: domain Description: LysR Location: 92273-92492 bp Feature: domain Description: LysR Location: 92273-92492 bp Feature: gene Location: 92522-92683 bp Feature: gene Location: 92946-94130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92994-93621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92994-93621 bp Feature: domain Description: GIIM Note: maturase Location: 93681-93906 bp Feature: domain Description: GIIM Note: maturase Location: 93681-93906 bp Feature: gene Location: 94623-95420 bp Feature: domain Description: HTH_18 Location: 95151-95382 bp Feature: domain Description: HTH_18 Location: 95 15 1-95 382 bp Feature: gene Location: 95499-95807 bp Feature: gene Location: 176786-176941 bp Feature: gene Location: 177080-178084 bp Feature: domain Description: KOG2741 Location: 177092-178037 bp Feature: domain Description: KOG2741 Location: 177092-178037 bp Feature: gene Location: 178199-179533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178478-179096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178478-179096 bp Feature: domain Description: GIIM Note: maturase Location: 179141-179342 bp Feature: domain Description: GIIM Note: maturase Location: 179141-179342 bp Feature: gene Location: 180187-180411 bp Feature: gene Location: 180542-180676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT-GII, GIIM (pfam08388), HTH_18 (pfam12833), KOG2741 (KOG2741, Dimeric dihydrodiol dehydrogenase )

Seq: PYMC01000052.1 Photobacterium lipolyticum strain DSM 16190 CFSAN065514_52, whole genome shotgun sequence (813 bp)
Overview 1 RT 1: 2-590 bp Neighborhood of RT #1 [2, 808] RVT-GII GIIM Feature: gene Location: 2-808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-326 bp Feature: domain Description: GIIM Note: maturase Location: 374-590 bp Feature: domain Description: GIIM Note: maturase Location: 374-590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)