myRT

myRT report for GCA_003026755.1_ASM302675v1

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Seq: PYNX01000035.1 Photobacterium sp. GB-50 CFSAN065450_35, whole genome shotgun sequence (16515 bp)
Overview 1 RT 1: 9706-15479 bp Neighborhood of RT #1 [9706, 15479] RVT-Retrons Feature: gene Location: 9706-9957 bp Feature: gene Location: 10195-10413 bp Feature: gene Location: 11341-13119 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11482-12103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 482-1 21 03 bp Feature: gene Location: 13668-14516 bp Feature: gene Location: 14535-15479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PYNX01000004.1 Photobacterium sp. GB-50 CFSAN065450_4, whole genome shotgun sequence (311673 bp)
Overview 1 RT 1: 45807-53395 bp Neighborhood of RT #1 [45807, 53430] ZnuB Chi1 DUF5011 DUF5011 ChiC_BD PRK13211 RVT-UG2 DUF2268 ChiC_BD Feature: gene Location: 45807-46640 bp Feature: domain Description: ZnuB Location: 45813-46599 bp Feature: domain Description: ZnuB Location: 45813-46599 bp Feature: gene Location: 47142-49340 bp Feature: domain Description: Chi1 Location: 47205-48174 bp Feature: domain Description: Chi1 Location: 472 05-48174 bp Feature: domain Description: DUF5011 Location: 48216-48420 bp Feature: domain Description: DUF5011 Location: 482 16-4842 0 bp Feature: domain Description: DUF5011 Location: 48438-48651 bp Feature: domain Description: DUF5011 Location: 48438-48651 bp Feature: domain Description: ChiC_BD Location: 48681-48807 bp Feature: domain Description: ChiC_BD Location: 48681-48807 bp Feature: domain Description: PRK13211 Location: 48846-49335 bp Feature: domain Description: PRK132 11 Location: 48846-49335 bp Feature: gene Location: 49411-50694 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 49615-50398 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 49615-50398 bp Feature: gene Location: 51492-52148 bp Feature: domain Description: DUF2268 Location: 51564-52122 bp Feature: domain Description: DUF2 2 68 Location: 51564-52 12 2 bp Feature: gene Location: 52606-53430 bp Feature: domain Description: ChiC_BD Location: 53263-53395 bp Feature: domain Description: ChiC_BD Location: 532 63-53395 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZnuB (COG1108), Chi1 (COG3469), DUF5011 (pfam16403), ChiC_BD (cd12215), PRK13211 (N-acetylglucosamine-binding protein GbpA), RVT-UG2, DUF2268 (pfam10026)

Seq: PYNX01000008.1 Photobacterium sp. GB-50 CFSAN065450_8, whole genome shotgun sequence (167760 bp)
Overview 1 RT 1: 161756-167573 bp Neighborhood of RT #1 [161756, 167573] ApbE SSL2 RVT_N RVT-GII GIIM Feature: gene Location: 161756-162826 bp Feature: domain Description: ApbE Location: 161801-162788 bp Feature: domain Description: ApbE Location: 161801-162788 bp Feature: gene Location: 163002-164747 bp Feature: domain Description: SSL2 Location: 163008-164412 bp Feature: domain Description: SSL2 Location: 163 008-164412 bp Feature: gene Location: 165013-166644 bp Feature: domain Description: RVT_N Location: 165220-165463 bp Feature: domain Description: RVT_N Location: 165220-165463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165508-166135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165508-16613 5 bp Feature: domain Description: GIIM Note: maturase Location: 166195-166420 bp Feature: domain Description: GIIM Note: maturase Location: 166195-166420 bp Feature: gene Location: 167145-167573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ApbE (pfam02424), SSL2 (COG1061), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)