myRT

myRT report for GCA_003027505.1_ASM302750v1

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Seq: PYQL01000021.1 Escherichia coli strain 14747-1 MOD1-EC4617_21_length_78095_cov_47.737354, whole genome shotgun sequence (78095 bp)
Overview 1 RT 1: 67512-75817 bp Neighborhood of RT #1 [67512, 75846] RVT-GII DDE_Tnp_IS66 HTH_23 InsE RVT-GII RVT-GII FHA_bHelix fil_hemag_20aa FHA_bHelix FHA_bHelix Feature: gene Location: 67512-67787 bp Feature: gene Location: 67983-68144 bp Feature: gene Location: 68226-68936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68427-68928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68427-68928 bp Feature: gene Location: 68931-69350 bp Feature: gene Location: 69388-69777 bp Feature: domain Description: DDE_Tnp_IS66 Location: 69493-69736 bp Feature: domain Description: DDE_Tnp_IS66 Location: 69493-69736 bp Feature: gene Location: 71196-71846 bp Feature: domain Description: HTH_23 Location: 71247-71346 bp Feature: domain Description: HTH_23 Location: 71 247-71 346 bp Feature: domain Description: InsE Location: 71472-71823 bp Feature: domain Description: InsE Location: 71 472-71 823 bp Feature: gene Location: 72218-72421 bp Feature: gene Location: 72828-73202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72834-73005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72834-73005 bp Feature: gene Location: 73218-74030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73491-73947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73491 -73947 bp Feature: gene Location: 74151-74354 bp Feature: gene Location: 74641-75846 bp Feature: domain Description: FHA_bHelix Location: 74659-74890 bp Feature: domain Description: FHA_bHelix Location: 74659-74890 bp Feature: domain Description: fil_hemag_20aa Location: 74893-75013 bp Feature: domain Description: fil_hemag_20aa Location: 74893-7501 3 bp Feature: domain Description: FHA_bHelix Location: 75124-75490 bp Feature: domain Description: FHA_bHelix Location: 751 24-75490 bp Feature: domain Description: FHA_bHelix Location: 75709-75817 bp Feature: domain Description: FHA_bHelix Location: 75709-7581 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_IS66 (pfam03050), HTH_23 (pfam13384), InsE (COG2963), FHA_bHelix (sd00046), fil_hemag_20aa (TIGR01731)

Seq: PYQL01000023.1 Escherichia coli strain 14747-1 MOD1-EC4617_23_length_68010_cov_27.244214, whole genome shotgun sequence (68010 bp)
Overview 1 RT 1: 3-1077 bp Neighborhood of RT #1 [3, 1085] RVT-GII PRK10173 PRK10173 Feature: gene Location: 3-302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 -144 bp Feature: gene Location: 341-652 bp Feature: domain Description: PRK10173 Location: 344-563 bp Feature: domain Description: PRK10173 Location: 344-563 bp Feature: gene Location: 636-1085 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Feature: domain Description: PRK10173 Location: 639-1077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: PYQL01000027.1 Escherichia coli strain 14747-1 MOD1-EC4617_27_length_34522_cov_47.412560, whole genome shotgun sequence (34522 bp)
Overview 1 RT 1: 15462-19387 bp Neighborhood of RT #1 [15462, 19401] Transposase_20 InsG RVT-GII GIIM rve_2 Feature: gene Location: 15462-16235 bp Feature: domain Description: Transposase_20 Location: 15891-16137 bp Feature: domain Description: Transposase_20 Location: 15891-1613 7 bp Feature: gene Location: 16239-16853 bp Feature: domain Description: InsG Location: 16242-16833 bp Feature: domain Description: InsG Location: 16242-1683 3 bp Feature: gene Location: 17240-18628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17570-18188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17570-18188 bp Feature: domain Description: GIIM Note: maturase Location: 18236-18467 bp Feature: domain Description: GIIM Note: maturase Location: 1823 6-18467 bp Feature: gene Location: 18856-19173 bp Feature: gene Location: 19249-19401 bp Feature: domain Description: rve_2 Location: 19279-19387 bp Feature: domain Description: rve_2 Location: 19279-193 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_20 (pfam02371), InsG (COG3385), RVT-GII, GIIM (pfam08388), rve_2 (pfam13333)

Seq: PYQL01000003.1 Escherichia coli strain 14747-1 MOD1-EC4617_3_length_323859_cov_39.205868, whole genome shotgun sequence (323859 bp)
Overview 1 RT 1: 50129-54070 bp Neighborhood of RT #1 [50129, 54070] RVT-Retrons Feature: gene Location: 50129-50368 bp Feature: gene Location: 50675-50851 bp Feature: gene Location: 50924-52696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51083-51701 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51083-51701 bp Feature: gene Location: 52718-52885 bp Feature: gene Location: 52931-54070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PYQL01000041.1 Escherichia coli strain 14747-1 MOD1-EC4617_41_length_3877_cov_34.400000, whole genome shotgun sequence (3877 bp)
Overview 1 RT 1: 3-2190 bp Neighborhood of RT #1 [3, 2228] RVT-GII GIIM PHA02517 InsE Feature: gene Location: 3-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-804 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: domain Description: GIIM Note: maturase Location: 879-1077 bp Feature: gene Location: 1439-1795 bp Feature: domain Description: PHA02517 Location: 1442-1751 bp Feature: domain Description: PHA025 17 Location: 1442-175 1 bp Feature: gene Location: 1824-2228 bp Feature: domain Description: InsE Location: 1854-2190 bp Feature: domain Description: InsE Location: 185 4-2190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: PYQL01000053.1 Escherichia coli strain 14747-1 MOD1-EC4617_53_length_1329_cov_59.793677, whole genome shotgun sequence (1329 bp)
Overview 1 RT 1: 2-1328 bp Neighborhood of RT #1 [2, 1327] PHA02517 RVT-GII Feature: gene Location: 2-409 bp Feature: domain Description: PHA02517 Location: 5-344 bp Feature: domain Description: PHA02517 Location: 5-344 bp Feature: gene Location: 1001-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1328 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)