myRT

myRT report for GCA_003028095.1_ASM302809v1

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Seq: PYRW01000169.1 Escherichia coli strain 364069-17 NODE_169_length_2570_cov_106.479738, whole genome shotgun sequence (2570 bp)
Overview 1 RT 1: 157-2559 bp Neighborhood of RT #1 [157, 2567] RVT-GII Intron_maturas2 HNHc DUF932 Feature: gene Location: 157-1935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 418-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 8-1 21 3 bp Feature: domain Description: Intron_maturas2 Location: 1339-1564 bp Feature: domain Description: Intron_maturas2 Location: 1 339-1 564 bp Feature: domain Description: HNHc Note: nucleases Location: 1759-1909 bp Feature: domain Description: HNHc Note: nucleases Location: 1 759-1 909 bp Feature: gene Location: 2427-2567 bp Feature: domain Description: DUF932 Location: 2442-2559 bp Feature: domain Description: DUF932 Location: 2442-2559 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067)

Seq: PYRW01000176.1 Escherichia coli strain 364069-17 NODE_176_length_2272_cov_150.525874, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PYRW01000069.1 Escherichia coli strain 364069-17 NODE_69_length_16026_cov_67.147682, whole genome shotgun sequence (16026 bp)
Overview 1 RT 1: 3238-6949 bp Neighborhood of RT #1 [3238, 6949] LacI PBP1_GntR RVT-GII GIIM RVT-GII Feature: gene Location: 3238-4269 bp Feature: domain Description: LacI Location: 3280-3415 bp Feature: domain Description: LacI Location: 3 280-3 415 bp Feature: domain Description: PBP1_GntR Location: 3454-4264 bp Feature: domain Description: PBP1_GntR Location: 3 454-4264 bp Feature: gene Location: 4400-4618 bp Feature: gene Location: 4796-5647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4799-5207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4799-5207 bp Feature: domain Description: GIIM Note: maturase Location: 5255-5480 bp Feature: domain Description: GIIM Note: maturase Location: 5255-5480 bp Feature: gene Location: 5620-6054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5812-6028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5812-6028 bp Feature: gene Location: 6223-6420 bp Feature: gene Location: 6779-6949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacI (pfam00356), PBP1_GntR (cd01575), RVT-GII, GIIM (pfam08388)

Seq: PYRW01000084.1 Escherichia coli strain 364069-17 NODE_84_length_11857_cov_33.392668, whole genome shotgun sequence (11857 bp)
Overview 1 RT 1: 3777-7261 bp Neighborhood of RT #1 [3777, 7261] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 3777-3929 bp Feature: gene Location: 3999-4901 bp Feature: domain Description: DUF1281 Location: 4068-4596 bp Feature: domain Description: DUF1281 Location: 4 068-4 596 bp Feature: domain Description: DUF1281_C Location: 4602-4842 bp Feature: domain Description: DUF1281_C Location: 4 602-4 84 2 bp Feature: gene Location: 4978-6702 bp Feature: RT Description: RVT_N Location: 5035-5272 bp Feature: RT Description: RVT_N Location: 5035-5272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5323-5971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5323-5971 bp Feature: domain Description: YkfC Location: 6103-6259 bp Feature: domain Description: YkfC Location: 6103-6259 bp Feature: domain Description: HNHc Note: nucleases Location: 6487-6646 bp Feature: domain Description: HNHc Note: nucleases Location: 64 87-664 6 bp Feature: gene Location: 6743-6883 bp Feature: gene Location: 6965-7261 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)