myRT

myRT report for GCA_003028395.1_ASM302839v1

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Seq: PYSO01000023.1 Pectobacterium punjabense strain SS95 FAU239, whole genome shotgun sequence (143285 bp)
Overview 1 RT 1: 2967-7824 bp Neighborhood of RT #1 [2967, 7824] AlpA RVT-UG17 SLATT_5 Feature: gene Location: 2967-3200 bp Feature: domain Description: AlpA Location: 2979-3171 bp Feature: domain Description: AlpA Location: 2979-31 71 bp Feature: gene Location: 3392-4483 bp Feature: gene Location: 4720-6090 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 4948-5554 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 4948-5554 bp Feature: gene Location: 6074-6622 bp Feature: domain Description: SLATT_5 Location: 6080-6599 bp Feature: domain Description: SLATT_5 Location: 6080-6599 bp Feature: gene Location: 7039-7824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlpA (COG3311), RVT-UG17, SLATT_5 (pfam18160)

Seq: PYSO01000024.1 Pectobacterium punjabense strain SS95 FAU240, whole genome shotgun sequence (51339 bp)
Overview 1 RT 1: 13297-19111 bp Neighborhood of RT #1 [13297, 19111] RVT-UG16 PRK13889 Feature: gene Location: 13297-13851 bp Feature: gene Location: 13868-14521 bp Feature: gene Location: 14621-16105 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 14984-15392 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 14984-15392 bp Feature: gene Location: 16288-17682 bp Feature: domain Description: PRK13889 Location: 16291-16870 bp Feature: domain Description: PRK13889 Location: 162 91-16870 bp Feature: gene Location: 18359-19111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG16, PRK13889 (conjugal transfer relaxase TraA; Provisional)

Seq: PYSO01000036.1 Pectobacterium punjabense strain SS95 FAU252, whole genome shotgun sequence (131779 bp)
Overview 1 RT 1: 82765-89067 bp Neighborhood of RT #1 [82765, 89072] ubiC RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 82765-83298 bp Feature: domain Description: ubiC Location: 82768-83269 bp Feature: domain Description: ubiC Location: 82768-83 269 bp Feature: gene Location: 83995-84138 bp Feature: gene Location: 84303-85952 bp Feature: domain Description: RVT_N Location: 84354-84597 bp Feature: domain Description: RVT_N Location: 843 54-84597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84642-85287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84642-85287 bp Feature: domain Description: GIIM Note: maturase Location: 85341-85572 bp Feature: domain Description: GIIM Note: maturase Location: 853 41-85572 bp Feature: domain Description: HNHc Note: nucleases Location: 85782-85944 bp Feature: domain Description: HNHc Note: nucleases Location: 85782-85944 bp Feature: gene Location: 87060-88706 bp Feature: domain Description: groEL Location: 87066-88692 bp Feature: domain Description: groEL Location: 87066-88692 bp Feature: gene Location: 88752-89072 bp Feature: domain Description: groES Location: 88782-89067 bp Feature: domain Description: groES Location: 88782-89067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ubiC (PRK11655), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), groES (PRK14533)

Seq: PYSO01000068.1 Pectobacterium punjabense strain SS95 FAU284, whole genome shotgun sequence (1467 bp)
Overview 1 RT 1: 464-1324 bp Neighborhood of RT #1 [464, 1324] RVT-GII Feature: gene Location: 464-994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794 -971 bp Feature: gene Location: 1172-1324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII