myRT

myRT report for GCA_003028645.1_ASM302864v1

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Seq: PYUB01000049.1 Paraburkholderia caribensis strain TJ182 NODE_49_length_57647_cov_13.6962, whole genome shotgun sequence (57647 bp)
Overview 1 RT 1: 50436-55512 bp Neighborhood of RT #1 [50436, 55673] DUF5372 RVT-GII GIIM RVT-GII RVT-GII GIIM IstB_IS21 InsE Feature: gene Location: 50436-50768 bp Feature: gene Location: 50821-51117 bp Feature: domain Description: DUF5372 Location: 50854-51085 bp Feature: domain Description: DUF5372 Location: 50854-51 085 bp Feature: gene Location: 51132-52145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51138-51762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 38-51 762 bp Feature: domain Description: GIIM Note: maturase Location: 51840-52062 bp Feature: domain Description: GIIM Note: maturase Location: 51 840-52062 bp Feature: gene Location: 52679-53356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52982-53336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52982-53336 bp Feature: gene Location: 53382-54002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53388-53622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53388-53622 bp Feature: domain Description: GIIM Note: maturase Location: 53697-53916 bp Feature: domain Description: GIIM Note: maturase Location: 53697-5391 6 bp Feature: gene Location: 54852-55259 bp Feature: domain Description: IstB_IS21 Location: 54909-55140 bp Feature: domain Description: IstB_IS21 Location: 54909-551 40 bp Feature: gene Location: 55194-55673 bp Feature: domain Description: InsE Location: 55260-55512 bp Feature: domain Description: InsE Location: 55260-5551 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695), InsE (COG2963)

Seq: PYUB01000070.1 Paraburkholderia caribensis strain TJ182 NODE_70_length_42952_cov_15.3876, whole genome shotgun sequence (42952 bp)
Overview 1 RT 1: 15282-18311 bp Neighborhood of RT #1 [15282, 18311] RVT_N RVT-GII GIIM Feature: gene Location: 15282-15431 bp Feature: gene Location: 15616-15750 bp Feature: gene Location: 15924-17114 bp Feature: domain Description: RVT_N Location: 15987-16224 bp Feature: domain Description: RVT_N Location: 15987-162 2 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16275-16917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 75-16917 bp Feature: domain Description: GIIM Note: maturase Location: 16968-17103 bp Feature: domain Description: GIIM Note: maturase Location: 16968-17103 bp Feature: gene Location: 17160-17651 bp Feature: gene Location: 17781-18311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PYUB01000077.1 Paraburkholderia caribensis strain TJ182 NODE_77_length_38894_cov_13.7922, whole genome shotgun sequence (38894 bp)
Overview 1 RT 1: 4268-9362 bp Neighborhood of RT #1 [4268, 9385] Abhydrolase_1 Abhydrolase_4 DUF772 IS5 RVT-GII DUF772 Feature: gene Location: 4268-6109 bp Feature: domain Description: Abhydrolase_1 Location: 4643-5186 bp Feature: domain Description: Abhydrolase_1 Location: 4643 -5186 bp Feature: domain Description: Abhydrolase_4 Location: 5681-5957 bp Feature: domain Description: Abhydrolase_4 Location: 5681-5957 bp Feature: gene Location: 6149-7273 bp Feature: domain Description: DUF772 Location: 6245-6329 bp Feature: domain Description: DUF772 Location: 6245-63 29 bp Feature: domain Description: IS5 Location: 6626-7226 bp Feature: domain Description: IS5 Location: 6626-7226 bp Feature: gene Location: 7266-8552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7470-8160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7470-8160 bp Feature: gene Location: 8756-8968 bp Feature: gene Location: 9095-9385 bp Feature: domain Description: DUF772 Location: 9251-9362 bp Feature: domain Description: DUF772 Location: 9251-93 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Abhydrolase_1 (pfam00561), Abhydrolase_4 (pfam08386), DUF772 (pfam05598), IS5 (COG3039), RVT-GII

Seq: PYUB01000078.1 Paraburkholderia caribensis strain TJ182 NODE_78_length_38585_cov_13.5048, whole genome shotgun sequence (38585 bp)
Overview 1 RT 1: 2-2722 bp Neighborhood of RT #1 [2, 2763] COG4584 RVT-GII GIIM COG3547 Feature: gene Location: 2-874 bp Feature: domain Description: COG4584 Location: 98-758 bp Feature: domain Description: COG4 584 Location: 98-758 bp Feature: gene Location: 922-1398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994 -1201 bp Feature: gene Location: 1353-1706 bp Feature: domain Description: GIIM Note: maturase Location: 1359-1485 bp Feature: domain Description: GIIM Note: maturase Location: 1359-14 85 bp Feature: gene Location: 1945-2763 bp Feature: domain Description: COG3547 Location: 1951-2722 bp Feature: domain Description: COG354 7 Location: 1951-2722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: PYUB01000084.1 Paraburkholderia caribensis strain TJ182 NODE_84_length_33213_cov_14.6591, whole genome shotgun sequence (33213 bp)
Overview 1 RT 1: 2-6756 bp Neighborhood of RT #1 [2, 6776] COG4584 RVT_N RVT-GII HTH_17 HTH_17 PinE Zn_ribbon_recom RVT-GII GIIM HNH HU GalU Feature: gene Location: 2-808 bp Feature: domain Description: COG4584 Location: 5-692 bp Feature: domain Description: COG45 84 Location: 5 -692 bp Feature: gene Location: 862-1350 bp Feature: domain Description: RVT_N Location: 895-1057 bp Feature: domain Description: RVT_N Location: 895 -105 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1102-1342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1102-1342 bp Feature: gene Location: 1365-2042 bp Feature: domain Description: HTH_17 Location: 1704-1827 bp Feature: domain Description: HTH_17 Location: 1704-1827 bp Feature: domain Description: HTH_17 Location: 1893-1998 bp Feature: domain Description: HTH_17 Location: 1893-1998 bp Feature: gene Location: 2135-3577 bp Feature: domain Description: PinE Location: 2186-2771 bp Feature: domain Description: PinE Location: 2186-2771 bp Feature: domain Description: Zn_ribbon_recom Location: 3131-3257 bp Feature: domain Description: Zn_ribbon_recom Location: 3131-325 7 bp Feature: gene Location: 3784-3951 bp Feature: gene Location: 4029-5165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4041-4443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4041-4443 bp Feature: domain Description: GIIM Note: maturase Location: 4494-4728 bp Feature: domain Description: GIIM Note: maturase Location: 4494-4728 bp Feature: domain Description: HNH Note: nucleases Location: 4986-5103 bp Feature: domain Description: HNH Note: nucleases Location: 4986-5 103 bp Feature: gene Location: 5228-5509 bp Feature: domain Description: HU Location: 5252-5492 bp Feature: domain Description: HU Location: 5 25 2-5 492 bp Feature: gene Location: 5781-6776 bp Feature: domain Description: GalU Location: 5901-6756 bp Feature: domain Description: GalU Location: 5 901-675 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, HTH_17 (pfam12728), PinE (COG1961), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), HNH (pfam01844), HU (cd13831), GalU (COG1210)