myRT

myRT report for GCA_003028655.1_ASM302865v1

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Seq: PYUC01000017.1 Paraburkholderia symbiotica strain JPY-366 NODE_17_length_144845_cov_24.0826, whole genome shotgun sequence (144845 bp)
Overview 1 RT 1: 28643-33651 bp Neighborhood of RT #1 [28643, 33651] COG4849 COG4861 RVT-Retrons Trypsin_2 Feature: gene Location: 28643-29491 bp Feature: domain Description: COG4849 Location: 28688-29381 bp Feature: domain Description: COG4849 Location: 28688-29381 bp Feature: gene Location: 29523-30569 bp Feature: domain Description: COG4861 Location: 29736-30555 bp Feature: domain Description: COG4861 Location: 29736-30555 bp Feature: gene Location: 30761-32596 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30908-31523 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 30908-31 523 bp Feature: domain Description: Trypsin_2 Location: 31994-32462 bp Feature: domain Description: Trypsin_2 Location: 31 994-32462 bp Feature: gene Location: 32776-32946 bp Feature: gene Location: 32977-33651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4849 (Predicted nucleotidyltransferase ), COG4861 (Uncharacterized protein ), RVT-Retrons, Trypsin_2 (pfam13365)

Seq: PYUC01000020.1 Paraburkholderia symbiotica strain JPY-366 NODE_20_length_92354_cov_27.8386, whole genome shotgun sequence (92354 bp)
Overview 1 RT 1: 2111-6881 bp Neighborhood of RT #1 [2111, 7744] RVT-UG17 SLATT_5 PRK10510 OmpA Feature: gene Location: 2111-2251 bp Feature: gene Location: 2384-3001 bp Feature: gene Location: 3230-4708 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3542-4154 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 3542 -4154 bp Feature: gene Location: 4932-5573 bp Feature: domain Description: SLATT_5 Location: 4935-5550 bp Feature: domain Description: SLATT_5 Location: 4935-5550 bp Feature: gene Location: 6059-7744 bp Feature: domain Description: PRK10510 Location: 6233-6392 bp Feature: domain Description: PRK10510 Location: 62 33-6392 bp Feature: domain Description: OmpA Location: 6470-6881 bp Feature: domain Description: OmpA Location: 6470-6881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, SLATT_5 (pfam18160), PRK10510 (OmpA family lipoprotein), OmpA (pfam00691)

Seq: PYUC01000024.1 Paraburkholderia symbiotica strain JPY-366 NODE_24_length_66630_cov_26.3973, whole genome shotgun sequence (66630 bp)
Overview 1 RT 1: 1746-6288 bp Neighborhood of RT #1 [1746, 6288] pimD_small pimC_large RVT-GII GIIM Feature: gene Location: 1746-2885 bp Feature: domain Description: pimD_small Location: 1755-2880 bp Feature: domain Description: pimD_small Location: 1755-2880 bp Feature: gene Location: 2892-4052 bp Feature: domain Description: pimC_large Location: 2898-4050 bp Feature: domain Description: pimC_large Location: 2898-4050 bp Feature: gene Location: 4467-5330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4473-4956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4473 -4956 bp Feature: domain Description: GIIM Note: maturase Location: 5046-5229 bp Feature: domain Description: GIIM Note: maturase Location: 5046-5229 bp Feature: gene Location: 5695-5943 bp Feature: gene Location: 5968-6288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pimD_small (TIGR03203), pimC_large (TIGR03204), RVT-GII, GIIM (pfam08388)