myRT

myRT report for GCA_003031575.1_ASM303157v1

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Seq: PVWU01000157.1 Rhizobium pusense strain S2 NODE_157_length_889_cov_35.9209, whole genome shotgun sequence (889 bp)
Overview 1 RT 1: 2-888 bp Neighborhood of RT #1 [2, 888] RVT-GII Feature: gene Location: 2-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275-41 9 bp Feature: gene Location: 601-888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PVWU01000025.1 Rhizobium pusense strain S2 NODE_25_length_56549_cov_15.011, whole genome shotgun sequence (56549 bp)
Overview 1 RT 1: 196-2974 bp Neighborhood of RT #1 [196, 2974] RVT-Retrons HTH_XRE Feature: gene Location: 196-384 bp Feature: gene Location: 637-1545 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 817-1324 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 817-132 4 bp Feature: gene Location: 1535-1858 bp Feature: domain Description: HTH_XRE Location: 1571-1733 bp Feature: domain Description: HTH_XRE Location: 1571-1733 bp Feature: gene Location: 2585-2974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: PVWU01000039.1 Rhizobium pusense strain S2 NODE_39_length_20575_cov_54.3928, whole genome shotgun sequence (20575 bp)
Overview 1 RT 1: 18504-20565 bp Neighborhood of RT #1 [18504, 20573] PHA02517 RVT-GII Feature: gene Location: 18504-18941 bp Feature: domain Description: PHA02517 Location: 18570-18909 bp Feature: domain Description: PHA02517 Location: 18570-18909 bp Feature: gene Location: 19194-19466 bp Feature: gene Location: 19560-20573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19833-20565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1983 3 -20565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: PVWU01000085.1 Rhizobium pusense strain S2 NODE_85_length_5202_cov_7.44278, whole genome shotgun sequence (5202 bp)
Overview 1 RT 1: 1713-4341 bp Neighborhood of RT #1 [1713, 4520] DUF3846 RVT_N RVT-GII GIIM Feature: gene Location: 1713-2066 bp Feature: gene Location: 2281-2715 bp Feature: domain Description: DUF3846 Location: 2305-2551 bp Feature: domain Description: DUF384 6 Location: 2305-2551 bp Feature: gene Location: 3021-4520 bp Feature: RT Description: RVT_N Location: 3126-3366 bp Feature: RT Description: RVT_N Location: 3126-3366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3414-4056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 14 -4 056 bp Feature: domain Description: GIIM Note: maturase Location: 4107-4341 bp Feature: domain Description: GIIM Note: maturase Location: 4 107-4 34 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3846 (pfam12957), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)