myRT

myRT report for GCA_003034505.1_ASM303450v1

Download annotations/find similar RTs

Seq: PHRN01000010.1 Klebsiella pneumoniae strain K18 KP-K18_NODE_10_length_229546_cov_46.3285_ID_1336, whole genome shotgun sequence (229546 bp)
Overview 1 RT 1: 124785-131886 bp Neighborhood of RT #1 [124785, 131886] HTH_23 Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 124785-125261 bp Feature: domain Description: HTH_23 Location: 124863-125004 bp Feature: domain Description: HTH_23 Location: 1 24863-1 25004 bp Feature: gene Location: 125682-126551 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 126204-126375 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 26204-1 26375 bp Feature: gene Location: 127207-128307 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 127387-127921 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 27387-1 27921 bp Feature: gene Location: 128422-130698 bp Feature: domain Description: AAA_15 Location: 128455-129463 bp Feature: domain Description: AAA_1 5 Location: 1 28455-1 29463 bp Feature: gene Location: 131581-131886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: PHRN01000002.1 Klebsiella pneumoniae strain K18 KP-K18_NODE_2_length_400367_cov_55.9148_ID_1029, whole genome shotgun sequence (400367 bp)
Overview 1 RT 1: 25643-29899 bp Neighborhood of RT #1 [25643, 29913] PRK10724 SmpB RVT-UG11 D Feature: gene Location: 25643-26080 bp Feature: domain Description: PRK10724 Location: 25646-26075 bp Feature: domain Description: PRK1072 4 Location: 2 5646-2 6075 bp Feature: gene Location: 26230-26712 bp Feature: domain Description: SmpB Location: 26260-26704 bp Feature: domain Description: SmpB Location: 2 62 60-2 6704 bp Feature: gene Location: 27327-27626 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 27330-27441 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2 7330-2 7441 bp Feature: gene Location: 28069-28257 bp Feature: gene Location: 28813-29913 bp Feature: domain Description: D Location: 28819-29899 bp Feature: domain Description: D Location: 2 8819-2 9899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, D (PHA02561)

Seq: PHRN01000050.1 Klebsiella pneumoniae strain K18 KP-K18_NODE_50_length_10677_cov_110.104_ID_4676, whole genome shotgun sequence (10677 bp)
Overview 1 RT 1: 5414-9785 bp Neighborhood of RT #1 [5414, 9901] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 5414-5716 bp Feature: domain Description: InsE Location: 5423-5705 bp Feature: domain Description: InsE Location: 5423 -5705 bp Feature: gene Location: 5743-6168 bp Feature: domain Description: PHA02517 Location: 5767-6103 bp Feature: domain Description: PHA02517 Location: 5767-6103 bp Feature: gene Location: 6760-8283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7033-7765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 703 3 -7765 bp Feature: domain Description: GIIM Note: maturase Location: 7840-8038 bp Feature: domain Description: GIIM Note: maturase Location: 7840-803 8 bp Feature: gene Location: 8448-8606 bp Feature: domain Description: PHA02517 Location: 8451-8571 bp Feature: domain Description: PHA02517 Location: 8451-8571 bp Feature: gene Location: 8825-9901 bp Feature: domain Description: COG3547 Location: 8864-9785 bp Feature: domain Description: COG3 547 Location: 8864-9785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )

Seq: PHRN01000087.1 Klebsiella pneumoniae strain K18 KP-K18_NODE_87_length_1894_cov_230.026_ID_9476, whole genome shotgun sequence (1894 bp)
Overview 1 RT 1: 61-1893 bp Neighborhood of RT #1 [61, 1893] RVT-GII Feature: gene Location: 61-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 66-1156 bp Feature: gene Location: 1702-1893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII