myRT

myRT report for GCA_003034925.1_ASM303492v1

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Seq: PZKH01000001.1 Gardnerella vaginalis strain ATCC 49145 barcode10_01, whole genome shotgun sequence (356503 bp)
Overview 1 RT 1: 42722-46465 bp Neighborhood of RT #1 [42722, 46465] Phage_holin_4_1 GH25_LysA-like RVT-DGRs Feature: gene Location: 42722-43198 bp Feature: domain Description: Phage_holin_4_1 Location: 42764-43049 bp Feature: domain Description: Phage_holin_4_1 Location: 42764-43049 bp Feature: gene Location: 43218-44216 bp Feature: domain Description: GH25_LysA-like Location: 43227-43806 bp Feature: domain Description: GH25_LysA-like Location: 43227-43806 bp Feature: gene Location: 44536-45657 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44809-45409 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44809-45409 bp Feature: gene Location: 45668-45799 bp Feature: gene Location: 46049-46465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), GH25_LysA-like (cd06417), RVT-DGRs

Seq: PZKH01000009.1 Gardnerella vaginalis strain ATCC 49145 barcode10_09, whole genome shotgun sequence (41092 bp)
Overview 1 RT 1: 13799-18525 bp Neighborhood of RT #1 [13799, 18563] Nudix_Hydrolase_29 COG1373 RVT-UG15 COG2865 ParE_toxin Feature: gene Location: 13799-14284 bp Feature: domain Description: Nudix_Hydrolase_29 Location: 13844-14225 bp Feature: domain Description: Nudix_Hydrolase_2 9 Location: 13844-142 2 5 bp Feature: gene Location: 14288-14542 bp Feature: domain Description: COG1373 Location: 14318-14534 bp Feature: domain Description: COG1373 Location: 14318-14534 bp Feature: gene Location: 14815-16320 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 15244-15643 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 152 44-15643 bp Feature: gene Location: 16354-17769 bp Feature: domain Description: COG2865 Location: 16357-17764 bp Feature: domain Description: COG2 865 Location: 16357-17764 bp Feature: gene Location: 18240-18563 bp Feature: domain Description: ParE_toxin Location: 18258-18525 bp Feature: domain Description: ParE_toxin Location: 182 58-1852 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nudix_Hydrolase_29 (cd04688), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-UG15, COG2865 (Predicted transcriptional regulator, contains HTH domain ), ParE_toxin (pfam05016)