myRT

myRT report for GCA_003038775.1_ASM303877v1

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Seq: PYKM01000164.1 Shigella sp. SHS-2 NODE_164_length_6339_cov_25.2336_ID_32163, whole genome shotgun sequence (6339 bp)
Overview 1 RT 1: 284-5719 bp Neighborhood of RT #1 [284, 5721] PAP2_acid_phosphatase Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 284-1033 bp Feature: domain Description: PAP2_acid_phosphatase Location: 359-1013 bp Feature: domain Description: PAP2_acid_phosphatase Location: 359-1 01 3 bp Feature: gene Location: 1429-1629 bp Feature: domain Description: Tra5 Location: 1438-1612 bp Feature: domain Description: Tra5 Location: 1 438-1 61 2 bp Feature: gene Location: 1642-2769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1942-2599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 942-2599 bp Feature: gene Location: 3068-3595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3074-3218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3074-321 8 bp Feature: domain Description: GIIM Note: maturase Location: 3302-3518 bp Feature: domain Description: GIIM Note: maturase Location: 3302-351 8 bp Feature: gene Location: 3948-4190 bp Feature: gene Location: 4102-5721 bp Feature: domain Description: ushA Location: 4117-5719 bp Feature: domain Description: ushA Location: 41 1 7-571 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388), ushA (PRK09558)

Seq: PYKM01000168.1 Shigella sp. SHS-2 NODE_168_length_6185_cov_24.8098_ID_32171, whole genome shotgun sequence (6185 bp)
Overview 1 RT 1: 3246-5901 bp Neighborhood of RT #1 [3246, 5901] COG3547 RVT-GII Feature: gene Location: 3246-3731 bp Feature: domain Description: COG3547 Location: 3264-3717 bp Feature: domain Description: COG3547 Location: 32 64-3717 bp Feature: gene Location: 3827-3994 bp Feature: gene Location: 4267-5238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4453-5107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4453-5107 bp Feature: gene Location: 5326-5463 bp Feature: gene Location: 5707-5901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII