myRT

myRT report for GCA_003044175.2_ASM304417v2

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Seq: PZMI02000001.1 Sinorhizobium meliloti strain AK555 0000001, whole genome shotgun sequence (3675317 bp)
Overview 1 RT 1: 1249266-1257711 bp 2 RT 2: 1954612-1961403 bp Neighborhood of RT #1 [1249266, 1257728] valS FadL RVT-GII TPR ExoIII-like_AP-endo Neighborhood of RT #2 [1954612, 1961633] couple_hipB AbiJ_NTD5 Abi_C RVT-UG12 YjgR YjgR SIR2_2 Feature: gene Location: 1249266-1252109 bp Feature: domain Description: valS Location: 1249272-1252095 bp Feature: domain Description: valS Location: 1 249272-1 252095 bp Feature: gene Location: 1252580-1253869 bp Feature: domain Description: FadL Location: 1252586-1253867 bp Feature: domain Description: FadL Location: 1 252586-1 253867 bp Feature: gene Location: 1254302-1255759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1254629-1255244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 254629-1 255244 bp Feature: gene Location: 1256072-1256878 bp Feature: domain Description: TPR Location: 1256189-1256867 bp Feature: domain Description: TPR Location: 1 2561 89-1 256867 bp Feature: gene Location: 1256937-1257728 bp Feature: domain Description: ExoIII-like_AP-endo Location: 1256940-1257711 bp Feature: domain Description: ExoIII-like_AP-endo Location: 1 256940-1 25771 1 bp Feature: gene Location: 1954612-1954860 bp Feature: domain Description: couple_hipB Location: 1954621-1954765 bp Feature: domain Description: couple_hipB Location: 1 954621 -1 954765 bp Feature: gene Location: 1955958-1956788 bp Feature: domain Description: AbiJ_NTD5 Location: 1956027-1956258 bp Feature: domain Description: AbiJ_NTD5 Location: 1 956027-1 956258 bp Feature: domain Description: Abi_C Location: 1956522-1956759 bp Feature: domain Description: Abi_C Location: 1 956522-1 956759 bp Feature: gene Location: 1957012-1958670 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1957369-1957816 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 957369-1 95781 6 bp Feature: gene Location: 1958729-1960444 bp Feature: domain Description: YjgR Location: 1958978-1959380 bp Feature: domain Description: YjgR Location: 1 958978-1 959380 bp Feature: domain Description: YjgR Location: 1959992-1960397 bp Feature: domain Description: YjgR Location: 1 959992-1 960397 bp Feature: gene Location: 1960437-1961633 bp Feature: domain Description: SIR2_2 Location: 1960962-1961403 bp Feature: domain Description: SIR2_2 Location: 1 960962-1 961 403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT valS (TIGR00422), FadL (COG2067), RVT-GII, TPR (smart00028), ExoIII-like_AP-endo (cd09086), couple_hipB (TIGR03070), AbiJ_NTD5 (pfam18865), Abi_C (pfam14355), RVT-UG12, YjgR (COG0433)
SIR2_2 (pfam13289)

Seq: PZMI02000002.1 Sinorhizobium meliloti strain AK555 0000002, whole genome shotgun sequence (1658858 bp)
Overview 1 RT 1: 336426-339501 bp 2 RT 2: 821618-827603 bp 3 RT 3: 1110998-1117100 bp Neighborhood of RT #1 [336426, 339509] RVT-GII GIIM MazF DUF3018 Neighborhood of RT #2 [821618, 827614] AraJ RVT-GII GIIM PRK09356 hutH Neighborhood of RT #3 [1110998, 1117100] Beta_helix Beta_helix RVT-GII Transposase_mut Feature: gene Location: 336426-336728 bp Feature: gene Location: 337122-337277 bp Feature: gene Location: 337508-338869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337835-338450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337835-338450 bp Feature: domain Description: GIIM Note: maturase Location: 338504-338720 bp Feature: domain Description: GIIM Note: maturase Location: 338504-33872 0 bp Feature: gene Location: 339169-339372 bp Feature: domain Description: MazF Location: 339172-339283 bp Feature: domain Description: MazF Location: 339172 -3392 83 bp Feature: gene Location: 339369-339509 bp Feature: domain Description: DUF3018 Location: 339372-339501 bp Feature: domain Description: DUF3018 Location: 339372 -339501 bp Feature: gene Location: 821618-822802 bp Feature: domain Description: AraJ Location: 821621-822779 bp Feature: domain Description: AraJ Location: 82 162 1-82 2 779 bp Feature: gene Location: 822750-823040 bp Feature: gene Location: 823271-824632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823598-824213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 3598-82 42 13 bp Feature: domain Description: GIIM Note: maturase Location: 824267-824483 bp Feature: domain Description: GIIM Note: maturase Location: 82 42 67-82 4483 bp Feature: gene Location: 824712-826082 bp Feature: domain Description: PRK09356 Location: 824871-826074 bp Feature: domain Description: PRK09356 Location: 82 4871-82 6074 bp Feature: gene Location: 826079-827614 bp Feature: domain Description: hutH Location: 826088-827603 bp Feature: domain Description: hutH Location: 82 6088-82 7603 bp Feature: gene Location: 1110998-1111849 bp Feature: domain Description: Beta_helix Location: 1111226-1111379 bp Feature: domain Description: Beta_helix Location: 11112 2 6-1111379 bp Feature: gene Location: 1112861-1114132 bp Feature: domain Description: Beta_helix Location: 1112930-1113050 bp Feature: domain Description: Beta_helix Location: 1112 930-1113050 bp Feature: gene Location: 1114787-1116133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1115078-1115765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1115078-1115765 bp Feature: gene Location: 1116707-1116910 bp Feature: domain Description: Transposase_mut Location: 1116713-1116866 bp Feature: domain Description: Transposase_mut Location: 1116713-1116866 bp Feature: gene Location: 1116936-1117100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MazF (COG2337), DUF3018 (pfam11455), AraJ (COG2814), PRK09356 (imidazolonepropionase; Validated), hutH (TIGR01225), Beta_helix (pfam13229), Transposase_mut (pfam00872)

Seq: PZMI02000003.1 Sinorhizobium meliloti strain AK555 0000003, whole genome shotgun sequence (1328877 bp)
Overview 1 RT 1: 929560-935075 bp Neighborhood of RT #1 [929560, 935161] DadA RVT-GII Transposase_mut Feature: gene Location: 929560-930885 bp Feature: domain Description: DadA Location: 929605-930853 bp Feature: domain Description: DadA Location: 929605-93 0853 bp Feature: gene Location: 931159-932007 bp Feature: gene Location: 932004-933413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 932358-933045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 23 58-93 3 045 bp Feature: gene Location: 933665-933904 bp Feature: gene Location: 933962-935161 bp Feature: domain Description: Transposase_mut Location: 933971-935075 bp Feature: domain Description: Transposase_mut Location: 93 3 971-93 5075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DadA (COG0665), RVT-GII, Transposase_mut (pfam00872)

Seq: PZMI02000004.1 Sinorhizobium meliloti strain AK555 0000004, whole genome shotgun sequence (440009 bp)
Overview 1 RT 1: 41578-48673 bp 2 RT 2: 63607-70118 bp 3 RT 3: 130152-135547 bp 4 RT 4: 272326-277126 bp 5 RT 5: 376093-380919 bp Neighborhood of RT #1 [41578, 48673] rve PRK08181 RVT-GII RVT-GII GIIM Neighborhood of RT #2 [63607, 70118] COG3293 COG3293 RVT-GII RVT-GII GIIM RVT-GII Neighborhood of RT #3 [130152, 135576] ectoine_ehuA COG3415 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #4 [272326, 277212] RmlC PRK07574 RVT-GII Transposase_mut Neighborhood of RT #5 [376093, 380919] COG3293 COG3293 GIIM RVT-GII RVT-GII DDE_3 RVT-GII GIIM Feature: gene Location: 41578-43086 bp Feature: domain Description: rve Location: 41959-42352 bp Feature: domain Description: rve Location: 4 1959-4 2352 bp Feature: gene Location: 43083-43895 bp Feature: domain Description: PRK08181 Location: 43089-43851 bp Feature: domain Description: PRK08181 Location: 4 3089-4 3851 bp Feature: gene Location: 44071-45210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44398-45088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 4 398-4 5088 bp Feature: gene Location: 45860-46972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46076-46730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6076-4 6730 bp Feature: domain Description: GIIM Note: maturase Location: 46811-46958 bp Feature: domain Description: GIIM Note: maturase Location: 4 6811-4 6958 bp Feature: gene Location: 47502-48059 bp Feature: gene Location: 48203-48673 bp Feature: gene Location: 63607-63807 bp Feature: gene Location: 63828-64673 bp Feature: domain Description: COG3293 Location: 63891-64254 bp Feature: domain Description: COG3293 Location: 63891-64 254 bp Feature: domain Description: COG3293 Location: 64266-64647 bp Feature: domain Description: COG3293 Location: 64 266-64 64 7 bp Feature: gene Location: 64997-66394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65324-66011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65324 -66011 bp Feature: gene Location: 66882-68141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67086-67743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67086-6774 3 bp Feature: domain Description: GIIM Note: maturase Location: 67824-68043 bp Feature: domain Description: GIIM Note: maturase Location: 67824 -6804 3 bp Feature: gene Location: 68140-68427 bp Feature: gene Location: 68701-69027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68707-68929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68707-68929 bp Feature: gene Location: 69123-69335 bp Feature: gene Location: 69819-70118 bp Feature: gene Location: 130152-130967 bp Feature: domain Description: ectoine_ehuA Location: 130209-130956 bp Feature: domain Description: ectoine_ehuA Location: 130209-130956 bp Feature: gene Location: 131070-131456 bp Feature: domain Description: COG3415 Location: 131079-131427 bp Feature: domain Description: COG34 15 Location: 131079-1314 27 bp Feature: gene Location: 132072-133253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132288-132942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132288-13294 2 bp Feature: domain Description: GIIM Note: maturase Location: 133023-133209 bp Feature: domain Description: GIIM Note: maturase Location: 133023-133209 bp Feature: gene Location: 133477-135177 bp Feature: domain Description: LZ_Tnp_IS66 Location: 133678-133909 bp Feature: domain Description: LZ_Tnp_IS66 Location: 133678-133909 bp Feature: domain Description: zf-IS66 Location: 133924-134059 bp Feature: domain Description: zf-IS66 Location: 133924 -134 059 bp Feature: domain Description: DDE_Tnp_IS66 Location: 134104-135001 bp Feature: domain Description: DDE_Tnp_IS66 Location: 134 104 -135001 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 135022-135133 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 135022-135133 bp Feature: gene Location: 135223-135576 bp Feature: domain Description: TnpB_IS66 Location: 135256-135547 bp Feature: domain Description: TnpB_IS66 Location: 135256-13554 7 bp Feature: gene Location: 272326-272943 bp Feature: domain Description: RmlC Location: 272488-272929 bp Feature: domain Description: RmlC Location: 2724 88-272929 bp Feature: gene Location: 273463-274668 bp Feature: domain Description: PRK07574 Location: 273472-274621 bp Feature: domain Description: PRK07574 Location: 2734 72-274 621 bp Feature: gene Location: 274895-276304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275249-275936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27524 9-275936 bp Feature: gene Location: 276437-276697 bp Feature: gene Location: 276766-277212 bp Feature: domain Description: Transposase_mut Location: 276769-277126 bp Feature: domain Description: Transposase_mut Location: 276769-277126 bp Feature: gene Location: 376093-376938 bp Feature: domain Description: COG3293 Location: 376156-376519 bp Feature: domain Description: COG3293 Location: 376156-376519 bp Feature: domain Description: COG3293 Location: 376531-376912 bp Feature: domain Description: COG3293 Location: 376531-376912 bp Feature: gene Location: 376939-377247 bp Feature: domain Description: GIIM Note: maturase Location: 376990-377212 bp Feature: domain Description: GIIM Note: maturase Location: 376990-377212 bp Feature: gene Location: 377363-377539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377369-377534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377369-377534 bp Feature: gene Location: 377544-377723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377592-377715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377592-377715 bp Feature: gene Location: 377772-378287 bp Feature: domain Description: DDE_3 Location: 377802-378201 bp Feature: domain Description: DDE_3 Location: 377802-378201 bp Feature: gene Location: 378264-378446 bp Feature: gene Location: 378489-379601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378705-379359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378705-379359 bp Feature: domain Description: GIIM Note: maturase Location: 379440-379587 bp Feature: domain Description: GIIM Note: maturase Location: 3794 4 0-379587 bp Feature: gene Location: 380343-380600 bp Feature: gene Location: 380620-380919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), PRK08181 (transposase; Validated), RVT-GII, GIIM (pfam08388), COG3293 (Transposase ), ectoine_ehuA (TIGR03005), COG3415 (Transposase ), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), RmlC (COG4101), PRK07574 (NAD-dependent formate dehydrogenase), Transposase_mut (pfam00872), DDE_3 (pfam13358)