myRT

myRT report for GCA_003044305.1_ASM304430v1

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Seq: PZOX01000002.1 Vitiosangium sp. GDMCC 1.1324 contig2, whole genome shotgun sequence (1005490 bp)
Overview 1 RT 1: 908427-919758 bp Neighborhood of RT #1 [908427, 919758] WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 RVT-Retrons Feature: gene Location: 908427-914909 bp Feature: domain Description: WD40 Location: 908619-909354 bp Feature: domain Description: WD40 Location: 90861 9-909354 bp Feature: domain Description: HEAT_2 Location: 909504-909735 bp Feature: domain Description: HEAT_2 Location: 909504-909735 bp Feature: domain Description: HEAT_2 Location: 909813-910038 bp Feature: domain Description: HEAT_2 Location: 90981 3-91 0038 bp Feature: domain Description: HEAT_2 Location: 910236-910485 bp Feature: domain Description: HEAT_2 Location: 91 0236-91 0485 bp Feature: domain Description: HEAT_2 Location: 910728-910956 bp Feature: domain Description: HEAT_2 Location: 91 0728-91 0956 bp Feature: domain Description: HEAT_2 Location: 911091-911367 bp Feature: domain Description: HEAT_2 Location: 91 1 091 -91 1 367 bp Feature: domain Description: HEAT_2 Location: 911403-911616 bp Feature: domain Description: HEAT_2 Location: 91 1 403-91 1 61 6 bp Feature: domain Description: HEAT_2 Location: 912198-912387 bp Feature: domain Description: HEAT_2 Location: 91 21 98-91 2387 bp Feature: domain Description: HEAT_2 Location: 912429-912630 bp Feature: domain Description: HEAT_2 Location: 91 2429-91 2630 bp Feature: domain Description: HEAT_2 Location: 912693-912909 bp Feature: domain Description: HEAT_2 Location: 91 2693-91 2909 bp Feature: domain Description: HEAT Location: 912924-913167 bp Feature: domain Description: HEAT Location: 91 2924-91 31 67 bp Feature: domain Description: HEAT_2 Location: 913635-913881 bp Feature: domain Description: HEAT_2 Location: 91 3635-91 3881 bp Feature: domain Description: HEAT_2 Location: 914394-914550 bp Feature: domain Description: HEAT_2 Location: 91 4394-91 4550 bp Feature: domain Description: HEAT_2 Location: 914682-914835 bp Feature: domain Description: HEAT_2 Location: 91 4682-91 4835 bp Feature: gene Location: 914906-916750 bp Feature: gene Location: 917155-918579 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 917713-918340 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91 771 3-91 8340 bp Feature: gene Location: 918638-919171 bp Feature: gene Location: 919417-919758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044), RVT-Retrons

Seq: PZOX01000027.1 Vitiosangium sp. GDMCC 1.1324 contig27, whole genome shotgun sequence (195055 bp)
Overview 1 RT 1: 70740-73810 bp Neighborhood of RT #1 [70740, 74196] CitB RVT-GII GIIM PRK10188 Chlorophyllase2 Feature: gene Location: 70740-71336 bp Feature: gene Location: 71401-71571 bp Feature: domain Description: CitB Location: 71407-71563 bp Feature: domain Description: CitB Location: 71407-71563 bp Feature: gene Location: 71644-72219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71650-72037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71650-72 037 bp Feature: domain Description: GIIM Note: maturase Location: 72109-72217 bp Feature: domain Description: GIIM Note: maturase Location: 72 109-72 2 17 bp Feature: gene Location: 72514-73218 bp Feature: domain Description: PRK10188 Location: 72526-73213 bp Feature: domain Description: PRK10188 Location: 72 52 6-732 13 bp Feature: gene Location: 73303-74196 bp Feature: domain Description: Chlorophyllase2 Location: 73501-73810 bp Feature: domain Description: Chlorophyllase2 Location: 73501-73810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CitB (TIGR02484), RVT-GII, GIIM (pfam08388), PRK10188 (transcriptional regulator SdiA), Chlorophyllase2 (pfam12740)

Seq: PZOX01000035.1 Vitiosangium sp. GDMCC 1.1324 contig35, whole genome shotgun sequence (108492 bp)
Overview 1 RT 1: 79142-86630 bp Neighborhood of RT #1 [79142, 86683] WGR_DNA_ligase SWIM RVT-Retrons FhlA Feature: gene Location: 79142-82216 bp Feature: domain Description: WGR_DNA_ligase Location: 79160-79376 bp Feature: domain Description: WGR_DNA_ligase Location: 79160-793 76 bp Feature: gene Location: 82206-83852 bp Feature: domain Description: SWIM Location: 83739-83820 bp Feature: domain Description: SWIM Location: 83 73 9-83 820 bp Feature: gene Location: 84131-85729 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84683-85298 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 84683 -85298 bp Feature: gene Location: 85758-86027 bp Feature: gene Location: 86096-86683 bp Feature: domain Description: FhlA Location: 86183-86630 bp Feature: domain Description: FhlA Location: 86183 -8663 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), SWIM (pfam04434), RVT-Retrons, FhlA (COG3604)

Seq: PZOX01000005.1 Vitiosangium sp. GDMCC 1.1324 contig5, whole genome shotgun sequence (719072 bp)
Overview 1 RT 1: 679060-686422 bp Neighborhood of RT #1 [679060, 688026] Atl1 rpt_mate_G_obs LRR_RI RVT-Retrons DAP2 CHB_HEX_C_1 CHB_HEX_C_1 CHB_HEX_C_1 CHB_HEX_C_1 CHB_HEX_C_1 CHB_HEX_C_1 CHB_HEX_C_1 CHB_HEX_C_1 CHB_HEX_C_1 CHB_HEX_C_1 CHB_HEX_C_1 Feature: gene Location: 679060-679479 bp Feature: domain Description: Atl1 Location: 679093-679378 bp Feature: domain Description: Atl1 Location: 679093-679378 bp Feature: gene Location: 679603-680580 bp Feature: domain Description: rpt_mate_G_obs Location: 679621-679732 bp Feature: domain Description: rpt_mate_G_obs Location: 679621-679732 bp Feature: domain Description: LRR_RI Location: 679882-680524 bp Feature: domain Description: LRR_RI Location: 679882-680524 bp Feature: gene Location: 680577-682112 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 681291-681885 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 681291-681885 bp Feature: gene Location: 682300-683349 bp Feature: domain Description: DAP2 Location: 682618-683344 bp Feature: domain Description: DAP2 Location: 682618-68334 4 bp Feature: gene Location: 683482-688026 bp Feature: domain Description: CHB_HEX_C_1 Location: 683626-683836 bp Feature: domain Description: CHB_HEX_C_1 Location: 683626-683836 bp Feature: domain Description: CHB_HEX_C_1 Location: 683896-684097 bp Feature: domain Description: CHB_HEX_C_1 Location: 683896-684 097 bp Feature: domain Description: CHB_HEX_C_1 Location: 684145-684349 bp Feature: domain Description: CHB_HEX_C_1 Location: 684 14 5-684 34 9 bp Feature: domain Description: CHB_HEX_C_1 Location: 684400-684604 bp Feature: domain Description: CHB_HEX_C_1 Location: 684 4 00-684 604 bp Feature: domain Description: CHB_HEX_C_1 Location: 684658-684868 bp Feature: domain Description: CHB_HEX_C_1 Location: 684 658-684 868 bp Feature: domain Description: CHB_HEX_C_1 Location: 684919-685129 bp Feature: domain Description: CHB_HEX_C_1 Location: 684 919-685129 bp Feature: domain Description: CHB_HEX_C_1 Location: 685177-685384 bp Feature: domain Description: CHB_HEX_C_1 Location: 685177-685384 bp Feature: domain Description: CHB_HEX_C_1 Location: 685438-685645 bp Feature: domain Description: CHB_HEX_C_1 Location: 6854 38-68564 5 bp Feature: domain Description: CHB_HEX_C_1 Location: 685699-685906 bp Feature: domain Description: CHB_HEX_C_1 Location: 685699-685906 bp Feature: domain Description: CHB_HEX_C_1 Location: 685960-686167 bp Feature: domain Description: CHB_HEX_C_1 Location: 685960-686167 bp Feature: domain Description: CHB_HEX_C_1 Location: 686227-686422 bp Feature: domain Description: CHB_HEX_C_1 Location: 686227-6864 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Atl1 (COG3695), rpt_mate_G_obs (TIGR02996), LRR_RI (smart00368), RVT-Retrons, DAP2 (COG1506), CHB_HEX_C_1 (pfam13290)