myRT

myRT report for GCA_003048145.1_ASM304814v1

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Seq: QAFY01000095.1 Escherichia coli strain KG-22 NODE_107_length_9927_cov_14.5147_ID_213, whole genome shotgun sequence (9927 bp)
Overview 1 RT 1: 96-4326 bp Neighborhood of RT #1 [96, 4326] PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 96-332 bp Feature: gene Location: 619-987 bp Feature: domain Description: PRK13732 Location: 727-913 bp Feature: domain Description: PRK1 3732 Location: 727-91 3 bp Feature: gene Location: 1027-2928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1294-2125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 294-21 25 bp Feature: domain Description: Intron_maturas2 Location: 2239-2497 bp Feature: domain Description: Intron_maturas2 Location: 2239-2497 bp Feature: domain Description: HNHc Note: nucleases Location: 2671-2833 bp Feature: domain Description: HNHc Note: nucleases Location: 2671 -2833 bp Feature: gene Location: 3670-3873 bp Feature: gene Location: 3925-4326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QAFY01000033.1 Escherichia coli strain KG-22 NODE_124_length_7551_cov_18.0917_ID_247, whole genome shotgun sequence (7551 bp)
Overview 1 RT 1: 114-5169 bp Neighborhood of RT #1 [114, 5174] RVT-UG4 AfaD-like PRK15223 Feature: gene Location: 114-338 bp Feature: gene Location: 574-1089 bp Feature: gene Location: 1211-1930 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1544-1925 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1544-192 5 bp Feature: gene Location: 2092-2544 bp Feature: domain Description: AfaD-like Location: 2179-2524 bp Feature: domain Description: AfaD-like Location: 2 179-2 52 4 bp Feature: gene Location: 2559-5174 bp Feature: domain Description: PRK15223 Location: 2637-5169 bp Feature: domain Description: PRK152 2 3 Location: 2 637-5169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, AfaD-like (cd18776), PRK15223 (fimbrial biogenesis outer membrane usher protein)