myRT

myRT report for GCA_003049195.1_ASM304919v1

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Seq: PYPV01000099.1 Mycobacterium tuberculosis strain AUH8 NODE_100_length_6064_cov_12.0701, whole genome shotgun sequence (6064 bp)
Overview 1 RT 1: 61-6030 bp Neighborhood of RT #1 [61, 6030] L1-EN RVT-UNC DUF1725 Tnp_22_trimer Transposase_22 Tnp_22_dsRBD Feature: gene Location: 61-3888 bp Feature: domain Description: L1-EN Location: 91-772 bp Feature: domain Description: L1 -EN Location: 91 -772 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1645-2302 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 645-2302 bp Feature: domain Description: DUF1725 Location: 3787-3841 bp Feature: domain Description: DUF1 725 Location: 3787-3841 bp Feature: gene Location: 3952-4968 bp Feature: domain Description: Tnp_22_trimer Location: 4282-4408 bp Feature: domain Description: Tnp_22_trimer Location: 4282-4408 bp Feature: domain Description: Transposase_22 Location: 4417-4708 bp Feature: domain Description: Transposase_22 Location: 441 7-4708 bp Feature: domain Description: Tnp_22_dsRBD Location: 4717-4909 bp Feature: domain Description: Tnp_22_dsRBD Location: 471 7-4909 bp Feature: gene Location: 5686-6030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), DUF1725 (pfam08333), Tnp_22_trimer (pfam17489), Transposase_22 (pfam02994), Tnp_22_dsRBD (pfam17490)

Seq: PYPV01000447.1 Mycobacterium tuberculosis strain AUH8 NODE_1334_length_411_cov_0.873239, whole genome shotgun sequence (411 bp)
Overview 1 RT 1: 1-295 bp Neighborhood of RT #1 [1, 378] RVT-GII Feature: gene Location: 1-378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58-295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58-2 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PYPV01000133.1 Mycobacterium tuberculosis strain AUH8 NODE_140_length_2064_cov_0.320268, whole genome shotgun sequence (1692 bp)
Overview 1 RT 1: 291-1691 bp Neighborhood of RT #1 [291, 1691] RVT-UNC Feature: gene Location: 291-710 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 309-684 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3 09-684 bp Feature: gene Location: 832-1026 bp Feature: gene Location: 1500-1691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-CRISPR/RVT-UG27(RVT-UNC)

Seq: PYPV01000150.1 Mycobacterium tuberculosis strain AUH8 NODE_164_length_1390_cov_0.458796, whole genome shotgun sequence (1390 bp)
Overview 1 RT 1: 2-1376 bp Neighborhood of RT #1 [2, 1387] RNase_H RVT-CRISPR-like Feature: gene Location: 2-484 bp Feature: domain Description: RNase_H Location: 98-473 bp Feature: domain Description: RNase_H Location: 98-4 73 bp Feature: gene Location: 745-1071 bp Feature: gene Location: 1133-1387 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1136-1376 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1136-1376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_H (pfam00075), RVT-CRISPR

Seq: PYPV01000187.1 Mycobacterium tuberculosis strain AUH8 NODE_209_length_817_cov_0.518841, whole genome shotgun sequence (817 bp)
Overview 1 RT 1: 10-553 bp Neighborhood of RT #1 [10, 564] RVT-G2L4 Feature: gene Location: 10-228 bp Feature: gene Location: 376-564 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 409-553 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 409-5 5 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4

Seq: PYPV01000020.1 Mycobacterium tuberculosis strain AUH8 NODE_20_length_64846_cov_26.6602, whole genome shotgun sequence (64846 bp)
Overview 1 RT 1: 4976-9036 bp Neighborhood of RT #1 [4976, 9056] SalY RVT-GII PRK13034 Feature: gene Location: 4976-5326 bp Feature: domain Description: SalY Location: 4979-5315 bp Feature: domain Description: SalY Location: 4979-5315 bp Feature: gene Location: 5293-6024 bp Feature: gene Location: 6455-7189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6695-7007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 6 95-7007 bp Feature: gene Location: 7555-7704 bp Feature: gene Location: 7779-9056 bp Feature: domain Description: PRK13034 Location: 7791-9036 bp Feature: domain Description: PRK13034 Location: 7791-9036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SalY (COG0577), RVT-GII, PRK13034 (serine hydroxymethyltransferase; Reviewed)