myRT

myRT report for GCA_003049275.1_ASM304927v1

Download annotations/find similar RTs

Seq: PYPZ01000598.1 Mycobacterium tuberculosis strain AUH13 NODE_2474_length_395_cov_0.526119, whole genome shotgun sequence (395 bp)
Overview 1 RT 1: 87-336 bp Neighborhood of RT #1 [87, 350] RVT-GII Feature: gene Location: 87-350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138-336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 38-336 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PYPZ01000214.1 Mycobacterium tuberculosis strain AUH13 NODE_260_length_666_cov_0.892393, whole genome shotgun sequence (666 bp)
Overview 1 RT 1: 232-445 bp Neighborhood of RT #1 [232, 462] RVT-GII Feature: gene Location: 232-462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343-445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PYPZ01000652.1 Mycobacterium tuberculosis strain AUH13 NODE_2787_length_385_cov_0.957364, whole genome shotgun sequence (385 bp)
Overview 1 RT 1: 1-346 bp Neighborhood of RT #1 [1, 384] RVT-GII Feature: gene Location: 1-384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70-346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70-3 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PYPZ01000263.1 Mycobacterium tuberculosis strain AUH13 NODE_341_length_568_cov_0.828054, whole genome shotgun sequence (568 bp)
Overview 1 RT 1: 3-348 bp Neighborhood of RT #1 [3, 377] RVT-CRISPR-like RVT-UNC Feature: gene Location: 3-179 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 12-156 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 12-156 bp Feature: gene Location: 231-377 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 237-348 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 237-34 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RVT-UG28/RVT-GII/RVT-DGRs(RVT-UNC)

Seq: PYPZ01000267.1 Mycobacterium tuberculosis strain AUH13 NODE_346_length_567_cov_0.678815, whole genome shotgun sequence (567 bp)
Overview 1 RT 1: 88-283 bp Neighborhood of RT #1 [88, 294] RVT-GII Feature: gene Location: 88-294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97-283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PYPZ01000003.1 Mycobacterium tuberculosis strain AUH13 NODE_3_length_146952_cov_47.9541, whole genome shotgun sequence (146952 bp)
Overview 1 RT 1: 21355-26408 bp Neighborhood of RT #1 [21355, 26428] LolD CAP_ED LolE SalY RVT-GII PRK13034 Feature: gene Location: 21355-22347 bp Feature: domain Description: LolD Location: 21370-22003 bp Feature: domain Description: LolD Location: 21370-22003 bp Feature: domain Description: CAP_ED Location: 22036-22294 bp Feature: domain Description: CAP_ED Location: 22036 -22294 bp Feature: gene Location: 22350-23399 bp Feature: domain Description: LolE Location: 22356-22689 bp Feature: domain Description: LolE Location: 22356 -226 89 bp Feature: domain Description: SalY Location: 22971-23388 bp Feature: domain Description: SalY Location: 22971-23388 bp Feature: gene Location: 23830-24555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24061-24373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2406 1-24373 bp Feature: gene Location: 24927-25076 bp Feature: gene Location: 25151-26428 bp Feature: domain Description: PRK13034 Location: 25163-26408 bp Feature: domain Description: PRK13034 Location: 2516 3-26 408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LolD (COG1136), CAP_ED (cl00047), LolE (COG4591), SalY (COG0577), RVT-GII, PRK13034 (serine hydroxymethyltransferase; Reviewed)

Seq: PYPZ01000316.1 Mycobacterium tuberculosis strain AUH13 NODE_444_length_503_cov_0.795213, whole genome shotgun sequence (503 bp)
Overview 1 RT 1: 3-309 bp Neighborhood of RT #1 [3, 380] RVT-UNC Feature: gene Location: 3-380 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 39-309 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 39-309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII/RVT-CRISPR/RVT-UG3(RVT-UNC)

Seq: PYPZ01000098.1 Mycobacterium tuberculosis strain AUH13 NODE_99_length_6206_cov_17.2158, whole genome shotgun sequence (6206 bp)
Overview 1 RT 1: 1261-6121 bp Neighborhood of RT #1 [1261, 6168] Tnp_22_trimer Transposase_22 Tnp_22_dsRBD L1-EN RVT-UNC DUF1725 Feature: gene Location: 1261-2277 bp Feature: domain Description: Tnp_22_trimer Location: 1591-1717 bp Feature: domain Description: Tnp_22_trimer Location: 1591-1717 bp Feature: domain Description: Transposase_22 Location: 1726-2017 bp Feature: domain Description: Transposase_22 Location: 1726-2017 bp Feature: domain Description: Tnp_22_dsRBD Location: 2026-2218 bp Feature: domain Description: Tnp_22_dsRBD Location: 2026-2218 bp Feature: gene Location: 2341-6168 bp Feature: domain Description: L1-EN Location: 2371-3052 bp Feature: domain Description: L1-EN Location: 2371-3052 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3925-4582 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3925-458 2 bp Feature: domain Description: DUF1725 Location: 6067-6121 bp Feature: domain Description: DUF1725 Location: 6067-6121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tnp_22_trimer (pfam17489), Transposase_22 (pfam02994), Tnp_22_dsRBD (pfam17490), L1-EN (cd09076), RVT-UG11/RVT-GII/RVT-CRISPR(RVT-UNC), DUF1725 (pfam08333)