myRT

myRT report for GCA_003049965.1_ASM304996v1

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Seq: PIFK01000157.1 Vibrio splendidus strain FF_144 Contig_157, whole genome shotgun sequence (2498 bp)
Overview 1 RT 1: 398-2258 bp Neighborhood of RT #1 [398, 2258] RVT_N RVT-GII GIIM Feature: gene Location: 398-1900 bp Feature: RT Description: RVT_N Location: 476-719 bp Feature: RT Description: RVT_N Location: 476-71 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1 391 bp Feature: domain Description: GIIM Note: maturase Location: 1451-1676 bp Feature: domain Description: GIIM Note: maturase Location: 1 451 -1 676 bp Feature: gene Location: 2049-2258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PIFK01000169.1 Vibrio splendidus strain FF_144 Contig_169, whole genome shotgun sequence (1785 bp)
Overview 1 RT 1: 108-1784 bp Neighborhood of RT #1 [108, 1784] RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 108-557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117-225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117-2 2 5 bp Feature: domain Description: GIIM Note: maturase Location: 285-510 bp Feature: domain Description: GIIM Note: maturase Location: 2 85-510 bp Feature: gene Location: 654-1562 bp Feature: RT Description: RVT_N Location: 861-1104 bp Feature: RT Description: RVT_N Location: 861-1104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149-1560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1149-1560 bp Feature: gene Location: 1638-1784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: PIFK01000031.1 Vibrio splendidus strain FF_144 Contig_31, whole genome shotgun sequence (64081 bp)
Overview 1 RT 1: 59591-63991 bp Neighborhood of RT #1 [59591, 64080] EpsG YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 59591-60667 bp Feature: domain Description: EpsG Location: 59699-60647 bp Feature: domain Description: EpsG Location: 59699-60647 bp Feature: gene Location: 60797-61396 bp Feature: domain Description: YhhI Location: 60806-60980 bp Feature: domain Description: YhhI Location: 60806-60980 bp Feature: domain Description: YhhI Location: 61052-61325 bp Feature: domain Description: YhhI Location: 61052-613 25 bp Feature: gene Location: 61544-62788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61706-62399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61706-623 99 bp Feature: domain Description: GIIM Note: maturase Location: 62483-62687 bp Feature: domain Description: GIIM Note: maturase Location: 62483 -62687 bp Feature: gene Location: 62836-64080 bp Feature: domain Description: YhhI Location: 62977-63307 bp Feature: domain Description: YhhI Location: 62977-63 3 07 bp Feature: domain Description: YhhI Location: 63373-63670 bp Feature: domain Description: YhhI Location: 63 3 73 -63 670 bp Feature: domain Description: YhhI Location: 63763-63991 bp Feature: domain Description: YhhI Location: 63 763 -63 991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EpsG (TIGR03029), YhhI (COG5433), RVT-GII, GIIM (pfam08388)

Seq: PIFK01000042.1 Vibrio splendidus strain FF_144 Contig_42, whole genome shotgun sequence (47312 bp)
Overview 1 RT 1: 315-4121 bp Neighborhood of RT #1 [315, 4141] RVT_N RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom COG3530 Feature: gene Location: 315-1826 bp Feature: RT Description: RVT_N Location: 522-765 bp Feature: RT Description: RVT_N Location: 522-765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810-1437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810-14 37 bp Feature: domain Description: GIIM Note: maturase Location: 1497-1722 bp Feature: domain Description: GIIM Note: maturase Location: 14 97-1722 bp Feature: gene Location: 1936-3894 bp Feature: domain Description: Resolvase Location: 1960-2335 bp Feature: domain Description: Resolvase Location: 1960-2335 bp Feature: domain Description: Recombinase Location: 2431-2719 bp Feature: domain Description: Recombinase Location: 24 31-2719 bp Feature: domain Description: Zn_ribbon_recom Location: 2758-2854 bp Feature: domain Description: Zn_ribbon_recom Location: 2758-2854 bp Feature: gene Location: 3944-4141 bp Feature: domain Description: COG3530 Location: 3947-4121 bp Feature: domain Description: COG3530 Location: 394 7-4 121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PIFK01000077.1 Vibrio splendidus strain FF_144 Contig_77, whole genome shotgun sequence (15884 bp)
Overview 1 RT 1: 3-3589 bp Neighborhood of RT #1 [3, 3603] RVT_N RVT_N RVT-GII GIIM PTS_IIB_chitobiose_lichenan Feature: gene Location: 3-302 bp Feature: RT Description: RVT_N Location: 210-300 bp Feature: RT Description: RVT_N Location: 210-300 bp Feature: gene Location: 604-2235 bp Feature: RT Description: RVT_N Location: 811-1054 bp Feature: RT Description: RVT_N Location: 811-105 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-1726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099-1726 bp Feature: domain Description: GIIM Note: maturase Location: 1783-2011 bp Feature: domain Description: GIIM Note: maturase Location: 1783-2011 bp Feature: gene Location: 2541-2675 bp Feature: gene Location: 3262-3603 bp Feature: domain Description: PTS_IIB_chitobiose_lichenan Location: 3307-3589 bp Feature: domain Description: PTS_IIB_chitobiose_lichenan Location: 3307-35 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTS_IIB_chitobiose_lichenan (cd05564), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PIFK01000081.1 Vibrio splendidus strain FF_144 Contig_81, whole genome shotgun sequence (15076 bp)
Overview 1 RT 1: 9190-11112 bp Neighborhood of RT #1 [9190, 11112] TnpB_IS66 RVT-Retrons Feature: gene Location: 9190-9546 bp Feature: domain Description: TnpB_IS66 Location: 9220-9511 bp Feature: domain Description: TnpB_IS6 6 Location: 9220-9511 bp Feature: gene Location: 9543-9896 bp Feature: gene Location: 9954-10646 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9978-10353 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9978-10353 bp Feature: gene Location: 10714-10842 bp Feature: gene Location: 10906-11112 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-Retrons

Seq: PIFK01000090.1 Vibrio splendidus strain FF_144 Contig_90, whole genome shotgun sequence (11379 bp)
Overview 1 RT 1: 4995-9427 bp Neighborhood of RT #1 [4995, 9636] RVT-Retrons COG3950 Feature: gene Location: 4995-6557 bp Feature: gene Location: 6566-6751 bp Feature: gene Location: 6848-7984 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7148-7745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7 148-7 7 45 bp Feature: gene Location: 8000-8131 bp Feature: gene Location: 7981-9636 bp Feature: domain Description: COG3950 Location: 8173-9427 bp Feature: domain Description: COG3950 Location: 817 3-9427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence )