myRT

myRT report for GCA_003050105.1_ASM305010v1

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Seq: PIGF01000010.1 Vibrio sp. 10N.286.45.A3 Contig_10, whole genome shotgun sequence (136238 bp)
Overview 1 RT 1: 132935-136012 bp Neighborhood of RT #1 [132935, 136236] INT_tnpB_C_Tn554 RVT-GII GIIM Feature: gene Location: 132935-134983 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 133883-134444 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 1 33883-1 34444 bp Feature: gene Location: 134983-135441 bp Feature: gene Location: 135517-136236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135520-135754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35520-1 35754 bp Feature: domain Description: GIIM Note: maturase Location: 135808-136012 bp Feature: domain Description: GIIM Note: maturase Location: 1 35808-1 3601 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_tnpB_C_Tn554 (cd01187), RVT-GII, GIIM (pfam08388)

Seq: PIGF01000114.1 Vibrio sp. 10N.286.45.A3 Contig_115, whole genome shotgun sequence (1869 bp)
Overview 1 RT 1: 189-1619 bp Neighborhood of RT #1 [189, 1843] RVT-GII GIIM Feature: gene Location: 189-320 bp Feature: gene Location: 530-1843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749-1361 bp Feature: domain Description: GIIM Note: maturase Location: 1415-1619 bp Feature: domain Description: GIIM Note: maturase Location: 1415-1619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIGF01000012.1 Vibrio sp. 10N.286.45.A3 Contig_12, whole genome shotgun sequence (120004 bp)
Overview 1 RT 1: 245-4133 bp Neighborhood of RT #1 [245, 4216] MdlB RVT_N RVT-GII GIIM MdlB Feature: gene Location: 245-637 bp Feature: domain Description: MdlB Location: 272-572 bp Feature: domain Description: MdlB Location: 272-572 bp Feature: gene Location: 723-2354 bp Feature: domain Description: RVT_N Location: 930-1173 bp Feature: domain Description: RVT_N Location: 93 0-1173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1218-1845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1218-1845 bp Feature: domain Description: GIIM Note: maturase Location: 1905-2130 bp Feature: domain Description: GIIM Note: maturase Location: 1905-213 0 bp Feature: gene Location: 2390-2533 bp Feature: gene Location: 2690-4216 bp Feature: domain Description: MdlB Location: 2717-4133 bp Feature: domain Description: MdlB Location: 2717-413 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PIGF01000013.1 Vibrio sp. 10N.286.45.A3 Contig_13, whole genome shotgun sequence (116610 bp)
Overview 1 RT 1: 114552-116385 bp Neighborhood of RT #1 [114552, 116609] OMP_b-brl RVT-GII GIIM Feature: gene Location: 114552-115163 bp Feature: domain Description: OMP_b-brl Location: 114597-115155 bp Feature: domain Description: OMP_b-brl Location: 114 597-115155 bp Feature: gene Location: 115257-115661 bp Feature: gene Location: 115875-116609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115878-116127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115878-116127 bp Feature: domain Description: GIIM Note: maturase Location: 116181-116385 bp Feature: domain Description: GIIM Note: maturase Location: 116181-116385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl (pfam13505), RVT-GII, GIIM (pfam08388)

Seq: PIGF01000030.1 Vibrio sp. 10N.286.45.A3 Contig_30, whole genome shotgun sequence (55327 bp)
Overview 1 RT 1: 51138-55320 bp Neighborhood of RT #1 [51138, 55325] TIGR02646 COG3950 RVT-Retrons DDE_Tnp_1_assoc YhhI Feature: gene Location: 51138-51785 bp Feature: domain Description: TIGR02646 Location: 51207-51609 bp Feature: domain Description: TIGR02646 Location: 5 1207-5 1609 bp Feature: gene Location: 51791-53419 bp Feature: domain Description: COG3950 Location: 51974-53225 bp Feature: domain Description: COG395 0 Location: 5 1974-5 3225 bp Feature: gene Location: 53409-54368 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53517-54120 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 35 17-5 4120 bp Feature: gene Location: 54753-55325 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 54771-55032 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 5 4771-5 5 032 bp Feature: domain Description: YhhI Location: 55173-55320 bp Feature: domain Description: YhhI Location: 5 5 173-5 5 320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433)

Seq: PIGF01000006.1 Vibrio sp. 10N.286.45.A3 Contig_6, whole genome shotgun sequence (172657 bp)
Overview 1 RT 1: 169014-172432 bp Neighborhood of RT #1 [169014, 172656] PRK13503 LamB RVT-GII GIIM Feature: gene Location: 169014-169892 bp Feature: domain Description: PRK13503 Location: 169098-169881 bp Feature: domain Description: PRK13503 Location: 16 9098-16 9881 bp Feature: gene Location: 170172-171503 bp Feature: domain Description: LamB Location: 170322-171501 bp Feature: domain Description: LamB Location: 170322-171501 bp Feature: gene Location: 171922-172656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171925-172174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171925-172174 bp Feature: domain Description: GIIM Note: maturase Location: 172228-172432 bp Feature: domain Description: GIIM Note: maturase Location: 172228-172432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13503 (HTH-type transcriptional activator RhaS), LamB (smart00281), RVT-GII, GIIM (pfam08388)

Seq: PIGF01000063.1 Vibrio sp. 10N.286.45.A3 Contig_63, whole genome shotgun sequence (19439 bp)
Overview 1 RT 1: 2-2544 bp Neighborhood of RT #1 [2, 2552] RVT-GII GH16_laminarinase_like CBM_11 Feature: gene Location: 2-340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-341 bp Feature: gene Location: 550-681 bp Feature: gene Location: 954-2552 bp Feature: domain Description: GH16_laminarinase_like Location: 1134-1956 bp Feature: domain Description: GH16_laminarinase_like Location: 1134-1956 bp Feature: domain Description: CBM_11 Location: 2085-2544 bp Feature: domain Description: CBM_11 Location: 2085-2544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GH16_laminarinase_like (cd08023), CBM_11 (pfam03425)

Seq: PIGF01000072.1 Vibrio sp. 10N.286.45.A3 Contig_72, whole genome shotgun sequence (14817 bp)
Overview 1 RT 1: 2-1203 bp Neighborhood of RT #1 [2, 1203] RVT-GII Feature: gene Location: 2-331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-332 bp Feature: gene Location: 541-672 bp Feature: gene Location: 922-1203 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PIGF01000073.1 Vibrio sp. 10N.286.45.A3 Contig_73, whole genome shotgun sequence (14428 bp)
Overview 1 RT 1: 12228-14201 bp Neighborhood of RT #1 [12228, 14425] PRK11193 PRK00884 RVT-GII GIIM Feature: gene Location: 12228-12755 bp Feature: domain Description: PRK11193 Location: 12231-12753 bp Feature: domain Description: PRK1119 3 Location: 12231-12753 bp Feature: gene Location: 12905-13486 bp Feature: domain Description: PRK00884 Location: 12917-13484 bp Feature: domain Description: PRK00884 Location: 129 17-13484 bp Feature: gene Location: 13691-14425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13694-13943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1369 4-139 43 bp Feature: domain Description: GIIM Note: maturase Location: 13997-14201 bp Feature: domain Description: GIIM Note: maturase Location: 139 9 7-14201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11193 (23S rRNA accumulation protein YceD), PRK00884 (Maf-like protein; Reviewed), RVT-GII, GIIM (pfam08388)