myRT

myRT report for GCA_003050305.1_ASM305030v1

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Seq: PIFL01000102.1 Vibrio splendidus strain FF_139 Contig_102, whole genome shotgun sequence (10896 bp)
Overview 1 RT 1: 138-2502 bp Neighborhood of RT #1 [138, 2549] RVT_N RVT-GII GIIM VOC Feature: gene Location: 138-1415 bp Feature: RT Description: RVT_N Location: 216-459 bp Feature: RT Description: RVT_N Location: 21 6-459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504-1131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504-1 1 31 bp Feature: domain Description: GIIM Note: maturase Location: 1191-1401 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 91 -1 401 bp Feature: gene Location: 1564-1773 bp Feature: gene Location: 2127-2549 bp Feature: domain Description: VOC Location: 2145-2502 bp Feature: domain Description: VOC Location: 21 45-2502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VOC (cl14632)

Seq: PIFL01000104.1 Vibrio splendidus strain FF_139 Contig_104, whole genome shotgun sequence (9214 bp)
Overview 1 RT 1: 5837-9213 bp Neighborhood of RT #1 [5837, 9213] YurZ PRK15092 RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 5837-6181 bp Feature: domain Description: YurZ Location: 5909-6176 bp Feature: domain Description: YurZ Location: 5909-6176 bp Feature: gene Location: 6238-7113 bp Feature: domain Description: PRK15092 Location: 6253-7099 bp Feature: domain Description: PRK15092 Location: 62 53-7099 bp Feature: gene Location: 7342-7968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7351-7459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7351-7459 bp Feature: domain Description: GIIM Note: maturase Location: 7519-7744 bp Feature: domain Description: GIIM Note: maturase Location: 7519-7744 bp Feature: gene Location: 8065-8973 bp Feature: RT Description: RVT_N Location: 8272-8515 bp Feature: RT Description: RVT_N Location: 82 72 -8515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8560-8971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8560-8971 bp Feature: gene Location: 9049-9213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YurZ (COG0599), PRK15092 (DNA-binding transcriptional repressor LrhA; Provisional), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655)

Seq: PIFL01000106.1 Vibrio splendidus strain FF_139 Contig_106, whole genome shotgun sequence (8388 bp)
Overview 1 RT 1: 5847-8381 bp Neighborhood of RT #1 [5847, 8386] PhdYeFM_antitox ParE RVT_N RVT-GII GIIM Feature: gene Location: 5847-6155 bp Feature: domain Description: PhdYeFM_antitox Location: 5898-6090 bp Feature: domain Description: PhdYeFM_antitox Location: 5898-6090 bp Feature: gene Location: 6155-6457 bp Feature: domain Description: ParE Location: 6158-6443 bp Feature: domain Description: ParE Location: 6158-6443 bp Feature: gene Location: 7145-8386 bp Feature: RT Description: RVT_N Location: 7193-7436 bp Feature: RT Description: RVT_N Location: 7193 -743 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7481-8108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7481-8108 bp Feature: domain Description: GIIM Note: maturase Location: 8168-8381 bp Feature: domain Description: GIIM Note: maturase Location: 8168-83 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhdYeFM_antitox (pfam02604), ParE (COG3668), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PIFL01000138.1 Vibrio splendidus strain FF_139 Contig_138, whole genome shotgun sequence (3818 bp)
Overview 1 RT 1: 1-2589 bp Neighborhood of RT #1 [1, 2603] IstB_IS21 RVT-GII GIIM IstB_IS21_ATP IstB_IS21 Feature: gene Location: 1-162 bp Feature: domain Description: IstB_IS21 Location: 7-136 bp Feature: domain Description: IstB_IS21 Location: 7-136 bp Feature: gene Location: 275-1522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 476-1133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 76-1133 bp Feature: domain Description: GIIM Note: maturase Location: 1214-1436 bp Feature: domain Description: GIIM Note: maturase Location: 1214 -14 36 bp Feature: gene Location: 1791-1946 bp Feature: gene Location: 2058-2603 bp Feature: domain Description: IstB_IS21_ATP Location: 2127-2208 bp Feature: domain Description: IstB_IS21_ATP Location: 2127-2208 bp Feature: domain Description: IstB_IS21 Location: 2220-2589 bp Feature: domain Description: IstB_IS21 Location: 2220-2589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), IstB_IS21_ATP (pfam08483), RVT-GII, GIIM (pfam08388)

Seq: PIFL01000145.1 Vibrio splendidus strain FF_139 Contig_145, whole genome shotgun sequence (3049 bp)
Overview 1 RT 1: 274-2270 bp Neighborhood of RT #1 [274, 2270] RVT-GII GIIM Feature: gene Location: 274-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556-1174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 6-1174 bp Feature: domain Description: GIIM Note: maturase Location: 1219-1429 bp Feature: domain Description: GIIM Note: maturase Location: 1219-1429 bp Feature: gene Location: 1906-2055 bp Feature: gene Location: 2127-2270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PIFL01000154.1 Vibrio splendidus strain FF_139 Contig_154, whole genome shotgun sequence (2762 bp)
Overview 1 RT 1: 1-2635 bp Neighborhood of RT #1 [1, 2635] RVT_N RVT-GII GIIM Feature: gene Location: 1-156 bp Feature: gene Location: 168-1799 bp Feature: RT Description: RVT_N Location: 375-618 bp Feature: RT Description: RVT_N Location: 375-6 18 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663-1290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 6 3-1290 bp Feature: domain Description: GIIM Note: maturase Location: 1347-1575 bp Feature: domain Description: GIIM Note: maturase Location: 1347-1575 bp Feature: gene Location: 2105-2635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PIFL01000162.1 Vibrio splendidus strain FF_139 Contig_162, whole genome shotgun sequence (2404 bp)
Overview 1 RT 1: 99-2396 bp Neighborhood of RT #1 [99, 2401] RVT_N RVT-GII GIIM SufE Feature: gene Location: 99-1730 bp Feature: RT Description: RVT_N Location: 306-549 bp Feature: RT Description: RVT_N Location: 306-549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594-1221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 594-1221 bp Feature: domain Description: GIIM Note: maturase Location: 1281-1506 bp Feature: domain Description: GIIM Note: maturase Location: 1281-1506 bp Feature: gene Location: 2156-2401 bp Feature: domain Description: SufE Location: 2159-2396 bp Feature: domain Description: SufE Location: 2159-2396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SufE (pfam02657), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PIFL01000069.1 Vibrio splendidus strain FF_139 Contig_69, whole genome shotgun sequence (28168 bp)
Overview 1 RT 1: 682-5440 bp Neighborhood of RT #1 [682, 5440] RimL Nudix_Hydrolase_32 RVT_N RVT-GII GIIM Feature: gene Location: 682-1212 bp Feature: domain Description: RimL Location: 688-1195 bp Feature: domain Description: RimL Location: 68 8 -1195 bp Feature: gene Location: 1804-2196 bp Feature: domain Description: Nudix_Hydrolase_32 Location: 1819-2167 bp Feature: domain Description: Nudix_Hydrolase_32 Location: 18 19-2167 bp Feature: gene Location: 2574-4205 bp Feature: RT Description: RVT_N Location: 2781-3024 bp Feature: RT Description: RVT_N Location: 278 1-3024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3069-3696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3069-3696 bp Feature: domain Description: GIIM Note: maturase Location: 3756-3981 bp Feature: domain Description: GIIM Note: maturase Location: 3756-398 1 bp Feature: gene Location: 4729-4863 bp Feature: gene Location: 4886-5440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Nudix_Hydrolase_32 (cd04691), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RimL (COG1670)

Seq: PIFL01000078.1 Vibrio splendidus strain FF_139 Contig_78, whole genome shotgun sequence (21800 bp)
Overview 1 RT 1: 3-2811 bp Neighborhood of RT #1 [3, 2811] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-Retrons Feature: gene Location: 3-389 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-246 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6-246 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 267-375 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 267-375 bp Feature: gene Location: 664-1617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 847-1381 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 847-1381 bp Feature: gene Location: 1895-2077 bp Feature: gene Location: 2596-2811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-Retrons