myRT

myRT report for GCA_003050605.1_ASM305060v1

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Seq: PIGE01000011.1 Vibrio sp. 10N.286.46.E10 Contig_11, whole genome shotgun sequence (136447 bp)
Overview 1 RT 1: 1-2895 bp Neighborhood of RT #1 [1, 3434] RVT-GII GIIM INT_tnpB_C_Tn554 Feature: gene Location: 1-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: domain Description: GIIM Note: maturase Location: 424-628 bp Feature: domain Description: GIIM Note: maturase Location: 424-628 bp Feature: gene Location: 928-1386 bp Feature: gene Location: 1386-3434 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 2334-2895 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 2334-2895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), INT_tnpB_C_Tn554 (cd01187)

Seq: PIGE01000112.1 Vibrio sp. 10N.286.46.E10 Contig_113, whole genome shotgun sequence (2312 bp)
Overview 1 RT 1: 2-2140 bp Neighborhood of RT #1 [2, 2154] RVT-GII GIIM himA Feature: gene Location: 2-1279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 1-833 bp Feature: domain Description: GIIM Note: maturase Location: 887-1091 bp Feature: domain Description: GIIM Note: maturase Location: 887-1091 bp Feature: gene Location: 1489-1620 bp Feature: gene Location: 1858-2154 bp Feature: domain Description: himA Location: 1864-2140 bp Feature: domain Description: himA Location: 1864-2 140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), himA (TIGR00987)

Seq: PIGE01000014.1 Vibrio sp. 10N.286.46.E10 Contig_14, whole genome shotgun sequence (119446 bp)
Overview 1 RT 1: 275-4163 bp Neighborhood of RT #1 [275, 4246] MdlB RVT_N RVT-GII GIIM MdlB Feature: gene Location: 275-667 bp Feature: domain Description: MdlB Location: 302-602 bp Feature: domain Description: MdlB Location: 3 02-602 bp Feature: gene Location: 753-2384 bp Feature: domain Description: RVT_N Location: 960-1203 bp Feature: domain Description: RVT_N Location: 960-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1248-1875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1248-1875 bp Feature: domain Description: GIIM Note: maturase Location: 1935-2160 bp Feature: domain Description: GIIM Note: maturase Location: 193 5-2160 bp Feature: gene Location: 2420-2563 bp Feature: gene Location: 2720-4246 bp Feature: domain Description: MdlB Location: 2747-4163 bp Feature: domain Description: MdlB Location: 2747-4163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PIGE01000031.1 Vibrio sp. 10N.286.46.E10 Contig_31, whole genome shotgun sequence (61389 bp)
Overview 1 RT 1: 1-3064 bp Neighborhood of RT #1 [1, 3273] RVT-GII GIIM PRK04517 ARS_like Feature: gene Location: 1-696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -214 bp Feature: domain Description: GIIM Note: maturase Location: 268-472 bp Feature: domain Description: GIIM Note: maturase Location: 268-4 72 bp Feature: gene Location: 752-1417 bp Feature: domain Description: PRK04517 Location: 755-1415 bp Feature: domain Description: PRK04 517 Location: 755-14 15 bp Feature: gene Location: 1711-3273 bp Feature: domain Description: ARS_like Location: 1792-3064 bp Feature: domain Description: ARS_like Location: 1792-3064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK04517 (hypothetical protein; Provisional), ARS_like (cd16146)

Seq: PIGE01000034.1 Vibrio sp. 10N.286.46.E10 Contig_34, whole genome shotgun sequence (55763 bp)
Overview 1 RT 1: 51317-55610 bp Neighborhood of RT #1 [51317, 55762] TIGR02646 COG3950 RVT-Retrons DDE_Tnp_1_assoc YhhI Feature: gene Location: 51317-51964 bp Feature: domain Description: TIGR02646 Location: 51386-51788 bp Feature: domain Description: TIGR02646 Location: 5 1386-5 1788 bp Feature: gene Location: 51970-53589 bp Feature: domain Description: COG3950 Location: 52153-53395 bp Feature: domain Description: COG395 0 Location: 5 215 3-5 3395 bp Feature: gene Location: 53579-54538 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53687-54290 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 3687-5 4290 bp Feature: gene Location: 54923-55762 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 54941-55202 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 5 4941-5 5 202 bp Feature: domain Description: YhhI Location: 55343-55610 bp Feature: domain Description: YhhI Location: 5 5 343-5 5 610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, DDE_Tnp_1_assoc (pfam13808), YhhI (COG5433)

Seq: PIGE01000067.1 Vibrio sp. 10N.286.46.E10 Contig_67, whole genome shotgun sequence (14762 bp)
Overview 1 RT 1: 11452-14760 bp Neighborhood of RT #1 [11452, 14760] RVT-UNC Feature: gene Location: 11452-11979 bp Feature: gene Location: 12036-12644 bp Feature: gene Location: 12773-13582 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 13136-13568 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 13136 -1356 8 bp Feature: gene Location: 13642-14760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG18/RVT-UG4/RVT-DGRs/RVT-CRISPR(RVT-UNC)

Seq: PIGE01000008.1 Vibrio sp. 10N.286.46.E10 Contig_8, whole genome shotgun sequence (173539 bp)
Overview 1 RT 1: 2-3705 bp Neighborhood of RT #1 [2, 3716] RVT-GII GIIM Maltoporin-like PRK13503 Feature: gene Location: 2-808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-326 bp Feature: domain Description: GIIM Note: maturase Location: 380-584 bp Feature: domain Description: GIIM Note: maturase Location: 380-584 bp Feature: gene Location: 1227-2558 bp Feature: domain Description: Maltoporin-like Location: 1320-2556 bp Feature: domain Description: Maltoporin-like Location: 1320-2556 bp Feature: gene Location: 2838-3716 bp Feature: domain Description: PRK13503 Location: 2922-3705 bp Feature: domain Description: PRK13503 Location: 2922-37 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Maltoporin-like (cd01346), PRK13503 (HTH-type transcriptional activator RhaS)