myRT

myRT report for GCA_003051105.1_ASM305110v1

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Seq: QAOO01000003.1 Nitrosomonas nitrosa strain Nm90 Ga0181054_103, whole genome shotgun sequence (178593 bp)
Overview 1 RT 1: 17899-24013 bp Neighborhood of RT #1 [17899, 24027] COG2865 HsdR EcoEI_R_C RVT-UG17 SLATT_5 SLATT_5 Feature: gene Location: 17899-19356 bp Feature: domain Description: COG2865 Location: 17965-19315 bp Feature: domain Description: COG2865 Location: 1 7965-1 931 5 bp Feature: gene Location: 19507-21864 bp Feature: domain Description: HsdR Location: 19510-21136 bp Feature: domain Description: HsdR Location: 1 951 0-21 1 36 bp Feature: domain Description: EcoEI_R_C Location: 21397-21862 bp Feature: domain Description: EcoEI_R_C Location: 21 397-21 862 bp Feature: gene Location: 21875-23182 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 22094-22700 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 22094-22700 bp Feature: gene Location: 23430-23606 bp Feature: domain Description: SLATT_5 Location: 23451-23586 bp Feature: domain Description: SLATT_5 Location: 23451 -23586 bp Feature: gene Location: 23650-24027 bp Feature: domain Description: SLATT_5 Location: 23656-24013 bp Feature: domain Description: SLATT_5 Location: 23656-2401 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), HsdR (COG4096), EcoEI_R_C (pfam08463), RVT-UG17, SLATT_5 (pfam18160)

Seq: QAOO01000020.1 Nitrosomonas nitrosa strain Nm90 Ga0181054_120, whole genome shotgun sequence (52700 bp)
Overview 1 RT 1: 140-3249 bp Neighborhood of RT #1 [140, 3272] RVT-GII PRK06487 DUF819 Feature: gene Location: 140-910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143-437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143-437 bp Feature: gene Location: 973-2058 bp Feature: domain Description: PRK06487 Location: 1078-2023 bp Feature: domain Description: PRK06487 Location: 1078-2 02 3 bp Feature: gene Location: 2145-3272 bp Feature: domain Description: DUF819 Location: 2151-3249 bp Feature: domain Description: DUF819 Location: 2 151-32 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK06487 (2-hydroxyacid dehydrogenase), DUF819 (pfam05684)

Seq: QAOO01000058.1 Nitrosomonas nitrosa strain Nm90 Ga0181054_158, whole genome shotgun sequence (4889 bp)
Overview 1 RT 1: 48-1180 bp Neighborhood of RT #1 [48, 1182] RVT-GII InsE PHA02517 Feature: gene Location: 48-209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51-168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51-168 bp Feature: gene Location: 338-634 bp Feature: domain Description: InsE Location: 350-629 bp Feature: domain Description: InsE Location: 3 50-629 bp Feature: gene Location: 631-1182 bp Feature: domain Description: PHA02517 Location: 697-1180 bp Feature: domain Description: PHA02517 Location: 697-1180 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: QAOO01000075.1 Nitrosomonas nitrosa strain Nm90 Ga0181054_175, whole genome shotgun sequence (1813 bp)
Overview 1 RT 1: 78-1811 bp Neighborhood of RT #1 [78, 1811] RVT-GII GIIM Feature: gene Location: 78-1331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-939 bp Feature: domain Description: GIIM Note: maturase Location: 1023-1242 bp Feature: domain Description: GIIM Note: maturase Location: 1023-124 2 bp Feature: gene Location: 1506-1811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QAOO01000076.1 Nitrosomonas nitrosa strain Nm90 Ga0181054_176, whole genome shotgun sequence (1723 bp)
Overview 1 RT 1: 1-1720 bp Neighborhood of RT #1 [1, 1720] DDE_Tnp_1_2 RVT-GII GIIM Feature: gene Location: 1-150 bp Feature: domain Description: DDE_Tnp_1_2 Location: 10-142 bp Feature: domain Description: DDE_Tnp_1_2 Location: 10-142 bp Feature: gene Location: 290-715 bp Feature: gene Location: 931-1548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952-1171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 2-1171 bp Feature: domain Description: GIIM Note: maturase Location: 1243-1462 bp Feature: domain Description: GIIM Note: maturase Location: 1243-1462 bp Feature: gene Location: 1574-1720 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_2 (pfam13586), RVT-GII, GIIM (pfam08388)