myRT

myRT report for GCA_003052405.1_ASM305240v1

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Seq: QAQO01000026.1 Salmonella enterica subsp. enterica strain CFSAN058507 SRR6919734_NODE_26, whole genome shotgun sequence (73650 bp)
Overview 1 RT 1: 54581-63115 bp Neighborhood of RT #1 [54581, 63564] GanA Transposase_mut Transposase_20 RVT-GII GIIM Phage_int_SAM_4 INT_RitA_C_like Phage_int_SAM_1 INT_RitC_C_like RVT_N RVT-GII DDE_Tnp_1_5 Feature: gene Location: 54581-56629 bp Feature: domain Description: GanA Location: 54614-56624 bp Feature: domain Description: GanA Location: 5461 4-56624 bp Feature: gene Location: 56778-57314 bp Feature: domain Description: Transposase_mut Location: 56817-56991 bp Feature: domain Description: Transposase_mut Location: 5681 7-56991 bp Feature: domain Description: Transposase_20 Location: 56997-57183 bp Feature: domain Description: Transposase_20 Location: 56997-571 83 bp Feature: gene Location: 57447-58184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57477-57663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57477-57663 bp Feature: domain Description: GIIM Note: maturase Location: 57717-57951 bp Feature: domain Description: GIIM Note: maturase Location: 5771 7-57951 bp Feature: gene Location: 58239-58370 bp Feature: gene Location: 58373-59275 bp Feature: domain Description: Phage_int_SAM_4 Location: 58715-58934 bp Feature: domain Description: Phage_int_SAM_4 Location: 5871 5-58934 bp Feature: domain Description: INT_RitA_C_like Location: 58946-59240 bp Feature: domain Description: INT_RitA_C_like Location: 58946-59240 bp Feature: gene Location: 60242-60562 bp Feature: domain Description: Phage_int_SAM_1 Location: 60287-60530 bp Feature: domain Description: Phage_int_SAM_1 Location: 60287-60530 bp Feature: gene Location: 60642-61199 bp Feature: domain Description: INT_RitC_C_like Location: 60645-61119 bp Feature: domain Description: INT_RitC_C_like Location: 60645-61 1 1 9 bp Feature: gene Location: 61249-61920 bp Feature: domain Description: RVT_N Location: 61252-61444 bp Feature: domain Description: RVT_N Location: 61 252-61 444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61489-61864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 489-61 864 bp Feature: gene Location: 62010-62297 bp Feature: gene Location: 62695-63564 bp Feature: domain Description: DDE_Tnp_1_5 Location: 62797-63115 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 62797-631 1 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GanA (COG1874), Transposase_mut (pfam00872), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT_N (pfam13655)
DDE_Tnp_1_5 (pfam13737)

Seq: QAQO01000009.1 Salmonella enterica subsp. enterica strain CFSAN058507 SRR6919734_NODE_9, whole genome shotgun sequence (187469 bp)
Overview 1 RT 1: 179192-184800 bp Neighborhood of RT #1 [179192, 184814] RVT-UG4 PRK15223 FimC Feature: gene Location: 179192-179560 bp Feature: gene Location: 179918-180403 bp Feature: gene Location: 180448-181422 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 180802-181249 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 180802 -1812 49 bp Feature: gene Location: 181440-183953 bp Feature: domain Description: PRK15223 Location: 181443-183951 bp Feature: domain Description: PRK152 2 3 Location: 181443-183951 bp Feature: gene Location: 184080-184814 bp Feature: domain Description: FimC Location: 184098-184800 bp Feature: domain Description: FimC Location: 184098-184800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK15223 (fimbrial biogenesis outer membrane usher protein), FimC (COG3121)